BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH12RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1375 1515 0.0
>3x_Contig1375
Length = 6996
Score = 1515 bits (764), Expect = 0.0
Identities = 804/816 (98%), Gaps = 1/816 (0%)
Strand = Plus / Plus
Query: 43 gcttatacactgttccggagctgataacagaggggacaagccccacgagtagcgaaccga 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1009 gcttatacactgttccggagctgaaaacagaggggacaagccccacgagtagcgaaccga 1068
Query: 103 aacagaagggaaatcgattccatttgactagctcttctcatcagttgttaaataccatca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aacagaagggaaatcgattccatttgactagctcttctcatcagttgttaaataccatca 1128
Query: 163 gaaacaagaaacaatctcaggctcaatgtctagttctaactgaccagaaagatataatgg 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1129 gaaacaagaaacaatctcaggctcaatgtctagttctaactgaccagaaagatagaaggg 1188
Query: 223 tttctgcattgagcagagtatcctctggagaacccttgaggaaaacattttcgaatccca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 tttctgcattgagcagagtatcctctggagaacccttgaggaaaacattttcgaatccca 1248
Query: 283 tcaacagatacgaataccagaagacctacgcggtacgaccaaagagttcaagtgctcgtt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 tcaacagatacgaataccagaagacctacgcggtacgaccaaagagttcaagtgctcgtt 1308
Query: 343 gcataccgactgttaacaccaatagtaattcttcctcttcgtcacgaaccaattctccgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 gcataccgactgttaacaccaatagtaattcttcctcttcgtcacgaaccaattctccgt 1368
Query: 403 tagaaccagttccagctgtgataactgacttgactgctgaagaaactttcaaaaagccta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 tagaaccagttccagctgtgataactgacttgactgctgaagaaactttcaaaaagccta 1428
Query: 463 tcaacgagaactacacgctagagaataagttcgaaactaataaatcgattgagtccatga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 tcaacgagaactacacgctagagaataagttcgaaactaataaatcgattgagtccatga 1488
Query: 523 acaacccgagtcccatcagttcaaaccaatcaccattcactaaaggaactgcagttgaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 acaacccgagtcccatcagttcaaaccaatcaccattcactaaaggaactgcagttgaac 1548
Query: 583 ttgctaattccataagccgacgtgattctttgaccttgaaacagttcaattctgatttga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 ttgctaattccataagccgacgtgattctttgaccttgaaacagttcaattctgatttga 1608
Query: 643 caaacaatacgccttcaataaattatacttctagaacgcaattgaaattagaccatctga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 caaacaatacgccttcaataaattatacttctagaacgcaattgaaattagaccatctga 1668
Query: 703 gagacatatcagccgaaactcgaaactttattcatgcaacagatgatataatttatctgt 762
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1669 gagacaaatcagccgaaactcgaaactctattcatgcaacagatgatataatttatctgt 1728
Query: 763 taaaccactctgcagactccagcgtttcgaaccattccctatta-cacagaaagatgttt 821
|||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||
Sbjct: 1729 taaaccactctgcagactccagcgtttcgaacaattcgctatcaccacagaaagatgttt 1788
Query: 822 ggtaaatcactgcacaggggaaaattttgcttaatt 857
|| |||||||||||||||||||| ||| ||||||||
Sbjct: 1789 ggaaaatcactgcacaggggaaattttggcttaatt 1824
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6798
Number of Sequences: 1807
Number of extensions: 6798
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)