BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA02FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1128 438 e-123
>3x_Contig1128
Length = 4759
Score = 438 bits (221), Expect = e-123
Identities = 263/275 (95%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 84 cttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaaatggtaaatcc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4485 cttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaaatggtaaatcc 4544
Query: 144 ggcttcttctgcagcaggacccattttttgtaaagtgttacaatcagaagcagcatatac 203
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4545 ggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcagaagcagcatatac 4604
Query: 204 tttgaccttgga-ttgntacccttcaaagtttcgaaatcagctaaataatcatccttttg 262
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4605 tttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaataatcatccttttg 4664
Query: 263 cttacaagaaccatcgt-gggtcttaacacctaagttgaatgcaagctcaccaacagcag 321
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4665 cttacaagaaccatcgtggggtcttaacacctaagntgaatgcaagctcaccaacagcag 4724
Query: 322 caacagttgaagcaccggccaacaaagtggcagaa 356
|||||||| |||||||||||||| ||||||||||
Sbjct: 4725 caacagtttgagcaccggccaacatagtggcagaa 4759
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9629
Number of Sequences: 1807
Number of extensions: 9629
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)