BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1118 1271 0.0
>3x_Contig1118
Length = 5540
Score = 1271 bits (641), Expect = 0.0
Identities = 699/713 (98%), Gaps = 4/713 (0%)
Strand = Plus / Plus
Query: 48 ctttttttgacaggttcgctcatggttattactcggttttttcagaaaggtttgaaagtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 ctttttttgacaggttcgctcatggttattactcggttttttcagaaaggtttgaaagtt 1471
Query: 108 atgaatggcctctgattttccataattcgcactcttctgaatgaatccttcgagtaacgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 atgaatggcctctgattttccataattcgcactcttctgaatgaatccttcgagtaacgt 1531
Query: 168 aaagtccgaagtataataagtgggaggacagtattatctaatggtttctttgtattattc 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1532 aaagtccgaagtataataagtgggaggacagtattatctaatggtttctttgcattattc 1591
Query: 228 tcccttgtcaccagctttatttaccttatatcataacttagaaaccttcaaaagtttaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 tcccttgtcaccagctttatttaccttatatcataacttagaaaccttcaaaagtttaat 1651
Query: 288 gtttttaagaacagaattatcacttggtacgttttgatagtttgcccaaacagaagatcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gtttttaagaacagaattatcacttggtacgttttgatagtttgcccaaacagaagatcc 1711
Query: 348 gcggcgtattattacagagtagtgtttaggctactatatactttgtatgggtatccctaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 gcggcgtattattacagagtagtgtttaggctactatatactttgtatgggtatccctaa 1771
Query: 408 aattgcgttttatatcatacaatctcacagagagagttcaccgaattccgagatggactc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 aattgcgttttatatcatacaatctcacagagagagttcaccgaattccgagatggactc 1831
Query: 468 gaatgactgtttccgacagttatcattgattgagtcacaattgttaagccaatcttccca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gaatgactgtttccgacagttatcattgattgagtcacaattgttaagccaatcttccca 1891
Query: 528 ttccattagttggaataacaaactcatatttggacttatttctctggcgacagacttcaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 ttccattagttggaataacaaactcatatttggacttatttctctggcgacagacttcaa 1951
Query: 588 tttattatatgcttcattcaagcctaatttgtcctatctcatcatgtaagctactatcaa 647
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 1952 tttattatatgcttcattcaagcttaatttgtcgtatctcatcatgtaagctactatcaa 2011
Query: 648 ggaagctgatcttgatactccacattgacaggggattatcacctttttttttgctggctt 707
||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
Sbjct: 2012 ggaagctgatcttgatactccacattgacagtggattagcacc-ttttttttgctggcat 2070
Query: 708 aggccttttgtattagttttgtttagttgttggtaggttctttagtattttgt 760
|||| || |||||||||| || ||||||| ||||||||| ||||||| |||||
Sbjct: 2071 aggcattctgtattagttctg-ttagttg-tggtaggtt-tttagtaatttgt 2120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8228
Number of Sequences: 1807
Number of extensions: 8228
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)