BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA03FM1.SCF screened BAC_end
(1224 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 363 e-100
3x_Contig1782 121 4e-27
3x_Contig1573 121 4e-27
3x_Contig1240 121 4e-27
3x_Contig563 109 1e-23
3x_Contig1772 103 8e-22
>3x_Contig1791
Length = 39945
Score = 363 bits (183), Expect = e-100
Identities = 232/250 (92%)
Strand = Plus / Minus
Query: 264 agganagctaccaaaaaagcgcgcnggaaaanaggnaagcgcaccgaancgaacaagcgc 323
|||| |||||||||||| | | || |||||| ||| ||| |||||| ||||||||||
Sbjct: 16918 aggatagctaccaaaaatgtgtgctggaaaataggtaagtttaccgaattgaacaagcgc 16859
Query: 324 aatagttgtttgattgacatttcgaatgttatcattttgtaaagattcacaaaaagggcg 383
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16858 aatagctgtttgattgacatttcgaatgttatcattttgtaaagattcacaaaaagggcg 16799
Query: 384 ccttgacaacgatggtacagacaattgacattttgaatgggtactggcaaaaaaagtaaa 443
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 16798 ccttgacaacgatggtacagagaattgagattttgaatgggtactggcaaaaaaagtaaa 16739
Query: 444 aacaaatgattgcgcccaggatcgaactggggacgttctgcgttgtaagcagatgccata 503
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 16738 aacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccata 16679
Query: 504 accgactaga 513
||||||||||
Sbjct: 16678 accgactaga 16669
Score = 222 bits (112), Expect = 1e-57
Identities = 124/128 (96%)
Strand = Plus / Minus
Query: 118 cctattgtaaaatggacggtatctaaccagataccctttgtataagaactgaccagtaag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17064 cctattgtaaaatggacggtatctaaccagataccctttgtataagaactgaccagtaag 17005
Query: 178 aaatgaataatttctaccgacacttttttgaaagaccttctatgacctaaaagttccgca 237
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 17004 aaatgaataatttctaccgacactcaattgaaagacctcctatgacctaaaagttccgca 16945
Query: 238 atagatac 245
||||||||
Sbjct: 16944 atagatac 16937
>3x_Contig1782
Length = 24703
Score = 121 bits (61), Expect = 4e-27
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 441 aaaaacaaatgattgcgcccaggatcgaactggggacgttctgcgttgtaagcagatgcc 500
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24344 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 24285
Query: 501 ataaccgactaga 513
|||||||||||||
Sbjct: 24284 ataaccgactaga 24272
>3x_Contig1573
Length = 10819
Score = 121 bits (61), Expect = 4e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 441 aaaaacaaatgattgcgcccaggatcgaactggggacgttctgcgttgtaagcagatgcc 500
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7045 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 7104
Query: 501 ataaccgactaga 513
|||||||||||||
Sbjct: 7105 ataaccgactaga 7117
>3x_Contig1240
Length = 5468
Score = 121 bits (61), Expect = 4e-27
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 441 aaaaacaaatgattgcgcccaggatcgaactggggacgttctgcgttgtaagcagatgcc 500
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1097 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 1038
Query: 501 ataaccgactaga 513
|||||||||||||
Sbjct: 1037 ataaccgactaga 1025
>3x_Contig563
Length = 1285
Score = 109 bits (55), Expect = 1e-23
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 447 aaatgattgcgcccaggatcgaactggggacgttctgcgttgtaagcagatgccataacc 506
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 687 aaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataacc 628
Query: 507 gactaga 513
|||||||
Sbjct: 627 gactaga 621
>3x_Contig1772
Length = 25851
Score = 103 bits (52), Expect = 8e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 450 tgattgcgcccaggatcgaactggggacgttctgcgttgtaagcagatgccataaccgac 509
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11780 tgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataaccgac 11839
Query: 510 taga 513
||||
Sbjct: 11840 taga 11843
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,169
Number of Sequences: 1807
Number of extensions: 12169
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 6
length of query: 1224
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1208
effective length of database: 10,329,639
effective search space: 12478203912
effective search space used: 12478203912
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)