BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA03RM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1429 1031 0.0
>3x_Contig1429
Length = 8041
Score = 1031 bits (520), Expect = 0.0
Identities = 613/632 (96%), Gaps = 9/632 (1%)
Strand = Plus / Plus
Query: 8 gggaaaaaagaacaaatctcttgaacat-cagt-cgagaatatagaagaagctatgaact 65
||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 5835 gggaaaagagaacaaatctcttgaaactacagtacgagaatatagaagaagctatgaact 5894
Query: 66 tattagaacaggtagatcccgaactatatgaaatggctaacgctgaagaatcaggtaaga 125
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5895 tattagaacaggtagatcccgaactatatgaaatgg-taacgctgaagaatcaggtaaga 5953
Query: 126 gggtcccattggaactaagggtacctactcaatacccaccgaacaatgtgtggtattatg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5954 gggtcccattggaactaagggtacctactcaatacccaccgaacaatgtgtggtattatg 6013
Query: 186 attacaagaaaaaggattgaatagttcgtttccaggcataatgcattaaaggtagagcac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6014 attacaagaaaaaggattgaatagttcgtttccaggcataatgcattaaaggtagagcac 6073
Query: 246 gaatcatatttcacattatctcttctaggacacttttttatcggtacaccaaacgtgggt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6074 gaatcatatttcacattatctcttctaggacacttttttatcggtacaccaaacgtgggt 6133
Query: 306 tgctcgagaaacaacttgtgtgatctacaggcaagaccaagtgccacgcaataaaatata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6134 tgctcgagaaacaacttgtgtgatctacaggcaagaccaagtgccacgcaataaaatata 6193
Query: 366 atggagatgttgcattatatattgtaatgaaagagttagatagaagaaatgtaaacaaac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6194 atggagatgttgcattatatattgtaatgaaagagttagatagaagaaatgtaaacaaac 6253
Query: 426 catgtaaataagcaattctacgaaatgatttatcggcagaatgaagctcttaagcttttc 485
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6254 catgtaaataagcaattctacgaaatga-ttatcggcagaatgaagctcttaagcttttc 6312
Query: 486 aaaggggactttaaccgtattccaaagtgacagtgtactttagaaaaaaacatggctttt 545
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 6313 aaaggggactttaaccgtattccaaagtgacagtgtacttcagaaaaaaacatggcttct 6372
Query: 546 gtgtattcatcggttcgaatattgaataatggtctttgtttacaaaattctattattcat 605
|||||| |||||||||||||| |||||||||||| |||||||| |||| ||||||||
Sbjct: 6373 gtgtatacatcggttcgaata-tgaataatggtc-ttgtttac-aaatagcattattca- 6428
Query: 606 tttgacttagaagatttttagcttgaatgggt 637
||||||||||| || |||||||||||||||||
Sbjct: 6429 tttgacttagatga-ttttagcttgaatgggt 6459
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7726
Number of Sequences: 1807
Number of extensions: 7726
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)