BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA04FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1247 1374 0.0
3x_Contig195 605 e-173
>3x_Contig1247
Length = 7218
Score = 1374 bits (693), Expect = 0.0
Identities = 718/725 (99%), Gaps = 1/725 (0%)
Strand = Plus / Plus
Query: 87 tgtgttttaagctgagctctggtagcgctttataatctcaggtttcattcgttcaatagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3127 tgtgttttaagctgagctctggtagcgctttataatctcaggtttcattcgttcaatagt 3186
Query: 147 aacggctcccaacacaatccctatatataacttttgtaaaggaattacaacatttccact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3187 aacggctcccaacacaatccctatatataacttttgtaaaggaattacaacatttccact 3246
Query: 207 ttgaaagggcttttcttgaacaattataataaattggacaagaataattaacaaatatac 266
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3247 ttgaaagggcacctctggaacaattataataaattggacaagaataattaacaaatatac 3306
Query: 267 agcaaatctagaaaagaattaaggcagataccctaaagataggttctagtattgtctacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 agcaaatctagaaaagaattaaggcagataccctaaagataggttctagtattgtctacc 3366
Query: 327 attaaaccagaaacaatcattagttggaatgtcgtgccctacattagtacgagaaccact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 attaaaccagaaacaatcattagttggaatgtcgtgccctacattagtacgagaaccact 3426
Query: 387 ccgaatcatgattctcatgtcgtgtcaccaactattctagttttctagaacttggttttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 ccgaatcatgattctcatgtcgtgtcaccaactattctagttttctagaacttggttttt 3486
Query: 447 ttttatatcataagaacatatatataagggccaatacacaaatgtataatgatgaaaaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 ttttatatcataagaacatatatataagggccaatacacaaatgtataatgatgaaaaaa 3546
Query: 507 gactgaactccaattagttgcagattctccaacattttcgcagtcgaaagaaatattgca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 gactgaactccaattagttgcagattctccaacattttcgcagtcgaaagaaatattgca 3606
Query: 567 ataagtaccgatacgtgtgaattcaaacgtttaataagccgataccaatgagtgctgttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 ataagtaccgatacgtgtgaattcaaacgtttaataagccgataccaatgagtgctgttg 3666
Query: 627 cccacgacgctgcttgtattttctgcaagattatcaaaggtatgtaaacctcaaattgtt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 cccacgacgctgcttgtattttctgcaagattatcaaaggtatgtaaacctcaaattgtt 3726
Query: 687 aggtgagaacaaatatctgtttctccccttggtttttgcatgctcgcaaccacccaagtg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727 aggtgagaacaaatatctgtttctccccttggtttttgcatgctcgcaaccacccaagtg 3786
Query: 747 gcttaaactagctctttgatcttatgaactataatactaacagaatcccactactggtgt 806
||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 3787 gcttagactagctctttgatcttatgaactataatactaacag-attccactactggtgt 3845
Query: 807 acttt 811
|||||
Sbjct: 3846 acttt 3850
>3x_Contig195
Length = 923
Score = 605 bits (305), Expect = e-173
Identities = 318/321 (99%), Gaps = 1/321 (0%)
Strand = Plus / Minus
Query: 491 tataatgatgaaaaaagactgaactccaattagttgcagattctccaacattttcgcagt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tataatgatgaaaaaagactgaactccaattagttgcagattctccaacattttcgcagt 744
Query: 551 cgaaagaaatattgcaataagtaccgatacgtgtgaattcaaacgtttaataagccgata 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cgaaagaaatattgcaataagtaccgatacgtgtgaattcaaacgtttaataagccgata 684
Query: 611 ccaatgagtgctgttgcccacgacgctgcttgtattttctgcaagattatcaaaggtatg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaatgagtgctgttgcccacgacgctgcttgtattttctgcaagattatcaaaggtatg 624
Query: 671 taaacctcaaattgttaggtgagaacaaatatctgtttctccccttggtttttgcatgct 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaacctcaaattgttaggtgagaacaaatatctgtttctccccttggtttttgcatgct 564
Query: 731 cgcaaccacccaagtggcttaaactagctctttgatcttatgaactataatactaacaga 790
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 cgcaaccacccaagtggcttagactagctctttgatcttatgaactataatactaacag- 505
Query: 791 atcccactactggtgtacttt 811
|| ||||||||||||||||||
Sbjct: 504 attccactactggtgtacttt 484
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7291
Number of Sequences: 1807
Number of extensions: 7291
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)