BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA04RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig380 1158 0.0
>3x_Contig380
Length = 1539
Score = 1158 bits (584), Expect = 0.0
Identities = 609/616 (98%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 254 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattattaggtagag 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattattaggtagag 60
Query: 314 gacgtggtggaaatacgtgggttaacccaaggggagttcttgcgtcaacaactgcaatta 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgtggtggaaatacgtgggttaacccaaggggagttcttgcgtcaacaactgcaatta 120
Query: 374 atttacctgctgtatcaccaagttctggagaaagaactccgatcgttttcgtgcaatatc 433
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 atttacctgctgtatcaccaagttctggagaaaga-ctccgatcgttttcgtgcaatatc 179
Query: 434 tagctatgttagcttactgtaaagccatccgcacatttgctcctggctatgaagatttac 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tagctatgttagcttactgtaaagccatccgcacatttgctcctggctatgaagatttac 239
Query: 494 cagtgaagatcaaatggcctaacgatctctatgcaatgaaacctcaatattactataaca 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagtgaagatcaaatggcctaacgatctctatgcaatgaaacctcaatattactataaca 299
Query: 554 ataacatgaaacttttggggaaagaattccccaatggattaattccgcttgacgacgtcg 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ataacatgaaacttttggggaaagaattccccaatggattaattccgcttgacgacgtcg 359
Query: 614 acccggcatttgtaaaggtatctggtcttttggtaaccacaaatttcgtatcaggaaaat 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acccggcatttgtaaaggtatctggtcttttggtaaccacaaatttcgtatcaggaaaat 419
Query: 674 actccttattattgggatgtggggttaacgtaacgaacgaagctccaacgacttccttgg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 actccttattattgggatgtggggttaacgtaacgaacgaagctccaacgacttccttgg 479
Query: 734 cgacatgggtcaaaatcttgaataatgaaagagatgctttaagaatgccgcacttaccgc 793
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 cgacatgggtcaaaatcttgaataatgaaagagatgctttaggaatgccgcacttaccgc 539
Query: 794 caattgatcatgaaatacttctagcgaagtatctcaaccaacttgatcctttgtttgaaa 853
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct: 540 caattgatcatgaaatacttctagcgaagtatctcaacgaacttgatactttgttgaaaa 599
Query: 854 aatttttgatgtacgg 869
|||| |||||||||||
Sbjct: 600 aattcttgatgtacgg 615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6415
Number of Sequences: 1807
Number of extensions: 6415
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)