BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA05FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 961 0.0
>3x_Contig1791
Length = 39945
Score = 961 bits (485), Expect = 0.0
Identities = 527/539 (97%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 89 ctctggtgtgttgacctccaattgagtttttcatgccagactctgcaaaggaagaggtag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18070 ctctggtgtgttgacctccaattgagtttttcatgccagactctgcaaaggaagaggtag 18011
Query: 149 atctacgcaacgttccgacacgacttccaaccaattctgaactatgagaacgagaaattg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18010 atctacgcaacgttccgacacgacttccaaccaattctgaactatgagaacgagaaattg 17951
Query: 209 gcgtgagactcagtann-ctcttgaatgctttctcgatgttgatttcgatgatctggagc 267
||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17950 gcgtgagacccaagatttctcttgaatgctttctcgatgttgatttcgatgatctggagc 17891
Query: 268 gcgatctagaacgcgacacagatccagatctattgccagaacagagcgacgctgcgtccg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17890 gcgatctagaacgcgacacagatccagatctattgccagaacagagcgacgctgcgtccg 17831
Query: 328 gtgtggataaaacattatttatctgcaccttttgtttcaaaattgcgctatgtccatcct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17830 gtgtggataaaacattatttatctgcaccttttgtttcaaaattgcgctatgtccatcct 17771
Query: 388 tcaattcctcggttcctctgtctgtcttcggtacgggtttaagatgtaaccagctcctaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17770 tcaattcctcggttcctctgtctgtcttcggtacgggtttaagatgtaaccagctcctaa 17711
Query: 448 gttttgatgatttgttcccactggcaatggtatcagtagttgtcgaaagtgtacttccgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17710 gttttgatgatttgttcccactggcaatggtatcagtagttgtcgaaagtgtacttccgc 17651
Query: 508 tgctatttgtggtgggctgaatgctaaacctcaaagattgggttgagggtgaacggatcc 567
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17650 tgctattgttgttgtgctgaatgctaaacctcaaagattgggttgagggtgaacggatcc 17591
Query: 568 tattgctatgattcaaatcattcctcaaattgaccgtaggatctttgttcgccgttagg 626
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 17590 tattgctatgattcaaatcattcctcaaattgaccgtaggatc-ttgttcgtcgttagg 17533
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5285
Number of Sequences: 1807
Number of extensions: 5285
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)