BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZA05RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1429                                                        1239   0.0  

>3x_Contig1429 
          Length = 8041

 Score = 1239 bits (625), Expect = 0.0
 Identities = 648/653 (99%), Gaps = 2/653 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   agaatcagaaagatgatgatgatgacgaatatattagaaaagttcgtacagctgtagaac 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3759 agaatcagaaagatgatgatgatgacgaatatattagaaaagttcgtacagctgtagaac 3818

                                                                        
Query: 108  aattcgaaaaggcaggcttcttcgaggatttagacgatactaaaaagggttcaaaaacaa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3819 aattcgaaaaggcaggcttcttcgaggatttagacgatactaaaaagggttcaaaaacaa 3878

                                                                        
Query: 168  aagccatggtatataagctagcagacgaggtgatagcccgacataaagactaactcttac 227
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3879 aagccatggtatataagctagcagacgaggtgatagcccgacataaagacaaactcttac 3938

                                                                        
Query: 228  gcataagagacccaaattatgataagtgg-tctgaaccattaaaaacccccatgatagat 286
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3939 gcataagagacccaaattatgataagtgggtctgaaccattaaaaacccccatgatagat 3998

                                                                        
Query: 287  aaatatcatgaaatcaaagaagaatggagacgtgaggaaacgaaccacggttccagtagt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3999 aaatatcatgaaatcaaagaagaatggagacgtgaggaaacgaaccacggttccagtagt 4058

                                                                        
Query: 347  ttaaacaacagttcaatgactacacagaatgttacatttgcatggagttcaaatgctcat 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4059 ttaaacaacagttcaatgactacacagaatgttacatttgcatggagttcaaatgctcat 4118

                                                                        
Query: 407  cgaccggagctgaccgcaccaaagaagcctttggaaccgcattccaataagaaatcaaca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4119 cgaccggagctgaccgcaccaaagaagcctttggaaccgcattccaataagaaatcaaca 4178

                                                                        
Query: 467  aatgaaatactacggagtaaagcaatgaaaagcgctcatgaattaagaagtaagcaaatt 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4179 aatgaaatactacggagtaaagcaatgaaaagcgctcatgaattaagaagtaagcaaatt 4238

                                                                        
Query: 527  ctgctcaataaactgcgggataaaaatgatagaaacaatctgccttcacaggatggtgat 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4239 ctgctcaataaactgcgggataaaaatgatagaaacaatctgccttcacaggatggtgat 4298

                                                                        
Query: 587  gatgtcaagccgaaatttaaaatggatcccttggaaccatttgtcgccaaagctttaccg 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299 gatgtcaagccgaaatttaaaatggatcccttggaaccatttgtcgccaaagctttaccg 4358

                                                                 
Query: 647  agagagaagatgaagcgaccaaaggaacaaaaggaagagcaaattttggtttt 699
            |||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 4359 agagagaagaagaagcgaccaaagg-agaaaaggaagagcaaattttggtttt 4410


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7709
Number of Sequences: 1807
Number of extensions: 7709
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)