BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA06FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 955 0.0
>3x_Contig1593
Length = 10902
Score = 955 bits (482), Expect = 0.0
Identities = 639/676 (94%), Gaps = 12/676 (1%)
Strand = Plus / Plus
Query: 92 cccccattcatccacgtttagtgcagatacactaactttgaaatcaacagtattgagttc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653 cccccattcatccacgtttagtgcagatacactaactttgaaatcaacagtattgagttc 7712
Query: 152 aacgttagtactcatgttatttatggatgttaggagcagaaacgtaaatgtcaaatctaa 211
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 7713 aacgttagtactcatgtaagtgatggatgttaggagcagaaacgtaaatgtcaaatctaa 7772
Query: 212 gaact-taatannttccgaccacctttcccacattgcagatcaccaatgaattgcgtgaa 270
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7773 gaacaataacattgcccgaccacctttcccacattgcagatcaccaatgaattgcgtgaa 7832
Query: 271 ccagtagccatatttccaccgacacacgtcccgttctatatttattacagaatggtacgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7833 ccagtagccatatttccaccgacacacgtcccgttctatatttattacagaatggtacgc 7892
Query: 331 caccgatgcaacggtctctagcaacaataacacttgtagtcccctgaaatttctcaacat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7893 caccgatgcaacggtctctagcaacaataacacttgtagtcccctgaaatttctcaacat 7952
Query: 391 aatcgtccgcatttcttcatgattctgtgtcaattctgcatgggatactatcaaaagaga 450
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 7953 aatcgtccgcatttcttcatgattctctgtcaattctgcatggtatactatcaaaagaga 8012
Query: 451 atgtgacaggtagctgaaaaacataagaatcaatgaacttagggcaatagttatcgtttg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8013 atgtgacaggtagctgaaaaacataagaatcaatgaacttagggcaatagttatcgtttg 8072
Query: 511 ggccttcataaaccgtagataggataactgtatacatgaagatcattaatttccccgcaa 570
| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 8073 gtccttcataaaccgtagata-gataactgtatacatgaagatcattaattt-cccgcaa 8130
Query: 571 aaattagaaacaatcatctttttatttcattcgttcaatcattaccttacaacaatcctc 630
|||||||||||||||||| |||||||||||||| ||| ||| ||||||||||| ||||
Sbjct: 8131 aaattagaaacaatcatc-ttttatttcattcgctcactcactaccttacaac-atccat 8188
Query: 631 ccaaaacacggcagccgaaatattttaaaatgtattgatatacaaaggaccagcttggaa 690
|||||||||||||||||||||| |||| |||||| |||||||||||||| |||||| | |
Sbjct: 8189 ccaaaacacggcagccgaaata-tttagaatgta-tgatatacaaagga-cagctt-gta 8244
Query: 691 aacaaacacgttggatcaaactt-aactcccttaatttggttttttttcccttttggcct 749
||||||||||| |||||||||| ||||||| || |||| ||| |||||||||||| | |
Sbjct: 8245 gacaaacacgtt-gatcaaacttcaactccc-tagtttgttttcttttcccttttgccat 8302
Query: 750 ttaaagggttacttca 765
||||||||||||||||
Sbjct: 8303 ttaaagggttacttca 8318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8467
Number of Sequences: 1807
Number of extensions: 8467
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)