BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZA06RM1.SCF screened BAC_end
         (965 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1606                                                        1195   0.0  

>3x_Contig1606 
          Length = 11468

 Score = 1195 bits (603), Expect = 0.0
 Identities = 658/675 (97%), Gaps = 1/675 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5880 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 5939

                                                                        
Query: 110  gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 5999

                                                                        
Query: 170  caacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgattgatcgcag 229
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6000 caacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 6059

                                                                        
Query: 230  cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6060 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 6119

                                                                        
Query: 290  atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6120 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 6179

                                                                        
Query: 350  tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6180 tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 6239

                                                                        
Query: 410  aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6240 aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 6299

                                                                        
Query: 470  tataattccccgccttccgttgtgtacctgctccctctcttcattcttagcttaagaaga 529
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 6300 tataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaaga 6359

                                                                        
Query: 530  aattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcggc 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6360 aattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcggc 6419

                                                                        
Query: 590  agctgcgtaagcagcggtagtcaaagtctggttggattgctggtgatgcaatcttttttc 649
            |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6420 agctgcgtaagcagcgttagtcaaagtctggttggattgctgttgatgcaatcttttttc 6479

                                                                        
Query: 650  cttttcgcattgttgctgaggtaggccgaacatcattattggttggatgtctggaatacg 709
             | |||  ||||||||||||||||||| ||||| ||||||| ||| || ||||  |||||
Sbjct: 6480 ttcttcagattgttgctgaggtaggccaaacattattattgattgtatttctgatatacg 6539

                           
Query: 710  tcgacaatctttttt 724
            || ||||||||||||
Sbjct: 6540 tc-acaatctttttt 6553


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5741
Number of Sequences: 1807
Number of extensions: 5741
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)