BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZA07FM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1706                                                        1156   0.0  

>3x_Contig1706 
          Length = 16303

 Score = 1156 bits (583), Expect = 0.0
 Identities = 658/674 (97%), Gaps = 7/674 (1%)
 Strand = Plus / Minus

                                                                         
Query: 88    cagcttcaggagtggcatgtgtttcgttctttgaaaagtacagcgactttgagttaaacc 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10316 cagcttcaggagtggcatgtgtttcgttctttgaaaagtacagcgactttgagttaaacc 10257

                                                                         
Query: 148   ttggtttccacgagagaagtgtcgagattttgcacaaaggagccaagaatatttcggatc 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10256 ttggtttccacgagagaagtgtcgagattttgcacaaaggagccaagaatatttcggatc 10197

                                                                         
Query: 208   ttgaaagtaattgttctttatgggaagaatgcatcaatagaagtg-aaaaacaattggac 266
             |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10196 ttgaaagtaaatgtactttatgggaagaatgcatcaatagaagtgcaaaaacaattggac 10137

                                                                         
Query: 267   gtcaatcacaccagaaaactatatgaagaatgtatagaaacattgcccaattctaaagca 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10136 gtcaatcacaccagaaaactatatgaagaatgtatagaaacattgcccaattctaaagca 10077

                                                                         
Query: 327   atcaagtttctacttccatttgctatcttagaagaatcgcgtaatgaggttgctcgttgt 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10076 atcaagtttctacttccatttgctatcttagaagaatcgcgtaatgaggttgctcgttgt 10017

                                                                         
Query: 387   agagcattgttagactacgggagcaaattactgaagcccgcacagaatgaagaactttgg 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10016 agagcattgttagactacgggagcaaattactgaagcccgcacagaatgaagaactttgg 9957

                                                                         
Query: 447   gatttctggaggaatttcgaaactatgcacggtacaaaagactcgttcaagaacatgcta 506
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9956  gatttctggaggaatttcgaaactatgcacggtacaaaagactcgttcaagaacatgcta 9897

                                                                         
Query: 507   aaagcacgtaggttcctagaggacacaatgaaagtaaatacagaggaagtatccagacat 566
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9896  aaagcacgtaggttcctagaggacacaatgaaagtaaatacagaggaagtatccagacat 9837

                                                                         
Query: 567   gcagatagcatcgaatttanggcgtcaactgcgaaaattagtggaagcgg-ccaccaagc 625
             ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 9836  gcagatagcatcgaatttagggcgtcaactgcgaaaattagtggaagcggaccaccaagc 9777

                                                                         
Query: 626   gcagaagattaaggatactcaaatacggctgaaattgatttaggtctattaaatggatat 685
             ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9776  gcagaagataaaggatactcaaatacggctgaaattgatttaggtctataaaatggatat 9717

                                                                         
Query: 686   attttggattaaagttggttattggcatatcggatcaatcttttatgtttttgttttggg 745
             || || |||||||||| | || ||||||||| ||||||||| ||||| ||||||||| ||
Sbjct: 9716  atatt-gattaaagtt-gataatggcatatc-gatcaatctcttatg-ttttgtttt-gg 9662

                           
Query: 746   aagatgtcgtattg 759
             ||||||||||||||
Sbjct: 9661  aagatgtcgtattg 9648


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7023
Number of Sequences: 1807
Number of extensions: 7023
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)