BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA07RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1405 0.0
>3x_Contig1531
Length = 8774
Score = 1405 bits (709), Expect = 0.0
Identities = 777/793 (97%), Gaps = 9/793 (1%)
Strand = Plus / Plus
Query: 49 tccaagctatccgacactgaaggatcacgtttgaattttgtcaatgctactacccatgaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1855 tccaagctatccgacactgaaggatcacgtttgaattttgtcaatgctactacccatgaa 1914
Query: 109 ctcactttgagggtgttctgtacctcatctatgttgaagtcataggactcctcaagatgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915 ctcactttgagggtgttctgtacctcatctatgttgaagtcataggactcctcaagatgt 1974
Query: 169 tgcttctgaaccgagctagagaacgatgactctcgaccataagtaccgtcacttcctctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975 tgcttctgaaccgagctagagaacgatgactctcgaccataagtaccgtcacttcctctt 2034
Query: 229 cgcttagccaccttcatggatggcaattcggtatcattcatcctgggcaacaaatcctca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 cgcttagccaccttcatggatggcaattcggtatcattcatcctgggcaacaaatcctca 2094
Query: 289 tcaccaaagcacaattgcaaaagatctgaatccaaatcctggatattctcataaagagag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 tcaccaaagcacaattgcaaaagatctgaatccaaatcctggatattctcataaagagag 2154
Query: 349 tgtatctgctcattggtatcgacaacagcttggtagttgcttttcaatgccttcccaaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tgtatctgctcattggtatcgacaacagcttggtagttgcttttcaatgccttcccaaat 2214
Query: 409 tcctcacgaagtttaaccacatctctactcaattgaacagaaatgtccctcacttcggcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 tcctcacgaagtttaaccacatctctactcaattgaacagaaatgtccctcacttcggcc 2274
Query: 469 acagatttctctctaaatagactagcagacatatcagtataacaaacagacagttagctt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 acagatttctctctaaatagactagcagacatatcagtataacaaacagacagttagctt 2334
Query: 529 tcgttacttctattttcaacggataatacgtgtatgtgaacgtgaatgcgaatgcgtgta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 tcgttacttctattttcaacggataatacgtgtatgtgaacgtgaatgcgaatgcgtgta 2394
Query: 589 tctgcttccaagattcaacactttcgtcgtcattcaatgagttatcttaacanagctgtg 648
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2395 tctgcttccaagattcaacactttcgtcgtcattcaatgagttatcttaacaaagctgtg 2454
Query: 649 gtttctctttaccatccattggttctcagactgaatatattgggtacagctgaacaaagt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gtttctctttaccatccattggttctcagactgaatatattgggtacagctgaacaaagt 2514
Query: 709 tcatgaaattgaaatttatcaaaaaaccaaaagtctataaagcttccctttgacagtcga 768
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 2515 tcatgaaattgaaatttatcaaaaaa-caaaagtctattaagc-tccctttgacagtcga 2572
Query: 769 accgggcgctcttttgttttttttttctgaggaatttcaacttttttttgccttaagcaa 828
||| ||||||||| | |||||||||||||||| ||| ||||||||| | |||||||
Sbjct: 2573 acc-ggcgctctt---tgttttttttctgaggaa-ttccacttttttt--gcataagcaa 2625
Query: 829 gaagcccgacctt 841
||||| |||||||
Sbjct: 2626 gaagcacgacctt 2638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7870
Number of Sequences: 1807
Number of extensions: 7870
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)