BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA08FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 896 0.0
>3x_Contig1544
Length = 10626
Score = 896 bits (452), Expect = 0.0
Identities = 528/546 (96%), Gaps = 7/546 (1%)
Strand = Plus / Minus
Query: 76 ggaagctaatagcagtggaccaagtgaaccatggtgattcctgtgttgccaacgagggga 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 ggaagctaatagcagtggaccaagtgaaccatggtgattcctgtgttgccaacgagggga 2084
Query: 136 aacttggctctatattccattggatcgatggttctaaggatattatcaagatatgtgacg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 aacttggctctatattccattggatcgatggttctaaggatattatcaagatatgtgacg 2024
Query: 196 ttgagttatttctcntctaaaacaaaacagtttcaacgtactgattgggcattctatggg 255
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 ttgagttaaatc--ctccaaaacaaaacagtttcaacgtactgattgggcattctatggg 1966
Query: 256 tgggcatcaagctcttggttgcggtatactatctccaaacttgtttcagcttatcataac 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 tgggcatcaagctcttggttgcggtatactatctccaaacttgtttcagcttatcataac 1906
Query: 316 catggagcccgttgttaagatgcttaacccaccaagtccaaagaagatcacgcttttgag 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 catggagcccgttgttaagatgcttaacccaccaagtccaaagaagatcacgcttttgag 1846
Query: 376 taacaactatttcaatgctattagcaacatggttcaagacacctttgccacaagggacga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 taacaactatttcaatgctattagcaacatggttcaagacacctttgccacaagggacga 1786
Query: 436 gtacgaggagttcatgaggaagcgcagcttttgaacacactctgataaaactattttaga 495
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1785 gtacgaggagttcatgaggaagcgcagcttttggagaaactctgataaaactattttaga 1726
Query: 496 tactttctgtgactctgaattgataaaacgaggatcgaaattccacacgaagacttcaaa 555
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 tactttctgtgacgctgagttgataaaacgaggatcgaaattccacacgaagacttcaaa 1666
Query: 556 agagcaacccctcatctggctacatgttgtctccaccccctatgccttactgggttaatt 615
|||||||| ||||||| || |||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 1665 agagcaacacctcatc-gggtacatg-tgtctcca-cccctatg-cttact-ggttaatt 1611
Query: 616 gacaac 621
||||||
Sbjct: 1610 gacaac 1605
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4903
Number of Sequences: 1807
Number of extensions: 4903
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)