BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA08RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig625 1063 0.0
>3x_Contig625
Length = 2660
Score = 1063 bits (536), Expect = 0.0
Identities = 555/560 (99%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 48 ttgagctggttgcatttttgttatgtcttgttgtaaactttaacggtttttggtctttta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 ttgagctggttgcatttttgttatgtcttgttgtaaactttaacggtttttggtctttta 2154
Query: 108 ggttattcccttgaaatctctatatacaacggaaaa-aatggggtcctccaaaaataagg 166
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2155 ggttattcccttgaaatctctatatacaacggaaaacaatggggtcctccaaaaataagg 2214
Query: 167 ctctcttatatacagaaatggtaccgaaggctttaaaacatgcatagatctaccccataa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 ctctcttatatacagaaatggtaccgaaggctttaaaacatgcatagatctaccccataa 2274
Query: 227 taaccaaaagaagtgtattaattgatcttggtccttgtagttacttcattgggtaattac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 taaccaaaagaagtgtattaattgatcttggtccttgtagttacttcattgggtaattac 2334
Query: 287 atagctcggcaaatccaaaagaaaataaagatctactgaagaaatctgtagcatatgcat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 atagctcggcaaatccaaaagaaaataaagatctactgaagaaatctgtagcatatgcat 2394
Query: 347 atatagcctctagcaaccagggactagtacattgtctattaacctcactgtagttttcaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2395 atatagcctctagcaaccagggactagtacattgtctattaacctcactgtagttttcaa 2454
Query: 407 gtccaatctatctctcacataaactgcgcagctgatgacgatatcttgtgatttattgga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gtccaatctatctctcacataaactgcgcagctgatgacgatatcttgtgatttattgga 2514
Query: 467 aagcgtttcaacttcgtctaaagtttccacatcggcgattgatatgtaatccaatttgaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 aagcgtttcaacttcgtctaaagtttccacatcggcgattgatatgtaatccaatttgaa 2574
Query: 527 atcaccagtctggtaatatgggatccatctactctgaatagcattaagtacatcatctct 586
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2575 atcaccagtctggtaatatgggatccatctactctgaatagcatcaagtacatcatctct 2634
Query: 587 agtaacaaccttcgtcgcct 606
||||||| | | ||||||||
Sbjct: 2635 agtaacaccttccgtcgcct 2654
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9644
Number of Sequences: 1807
Number of extensions: 9644
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)