BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA09FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1003 0.0
>3x_Contig1486
Length = 12131
Score = 1003 bits (506), Expect = 0.0
Identities = 575/594 (96%), Gaps = 3/594 (0%)
Strand = Plus / Plus
Query: 88 tcgaagttcaaaacagaagacgtgctatatgtagcagaaaaatggtttctccgtccttta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 tcgaagttcaaaacagaagacgtgctatatgtagcagaaaaatggtttctccgtccttta 8974
Query: 148 atgatatcagacacattttaaactctgcccagattttggccttactcaaatcgaaagaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8975 atgatatcagacacattttaaactctgcccagattttggccttactcaaatcgaaagaat 9034
Query: 208 tgaaattggtt-cttttgttggtgacgttacgctatatgaggatgggggatccattgaaa 266
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9035 tgaaattggtcacttttgatggtgacgttacgctatatgaggatgggggatccattgaaa 9094
Query: 267 gaggtggtaaaatcgttacaaggattatcacgttgttgaaacgtgggatcaacgttggtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9095 gaggtggtaaaatcgttacaaggattatcacgttgttgaaacgtgggatcaacgttggtg 9154
Query: 327 ttgtcactgccgccgggtatgatgacccagataaatacaaggaacgtctgtatggactat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9155 ttgtcactgccgccgggtatgatgacccagataaatacaaggaacgtctgtatggactat 9214
Query: 387 gctttgcgttgttctccgataagtcaatgtcgttggaacagaaatcaaaattgaccgtta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9215 gctttgcgttgttctccgataagtcaatgtcgttggaacagaaatcaaaattgaccgtta 9274
Query: 447 tgggaggtgaatctaactatttgttccagtatttcgagaccttggaacaatttggtttta 506
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9275 tgggaggtgaatctaactatttgttccagtatttcgagacctcggaacaatttggtttta 9334
Query: 507 agttcattgatgacgatgaatgggtgccctcaagtgttaaagcttgctttgatgatgata 566
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 9335 agtccattgatgacgatgaatgggtgccctcaagtgttaaagcttggtctgatgatgata 9394
Query: 567 tcgacgctactttaaacgtcgcacagacgtgttttggcgaattaagttatcttgttggat 626
|||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||| |
Sbjct: 9395 tcgacgctaccttagacgtcgcacagacgtgttttggcgaattaagtcatctgcttgca- 9453
Query: 627 ttaccat-ggaatgtcaaattttccgcaaaaaaaaagcagtgggatttgtccct 679
||||||| | ||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct: 9454 ttaccatcgaaatgtcaaattatccgcaaaaaaagagcagttggatttgtccct 9507
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,009
Number of Sequences: 1807
Number of extensions: 13009
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)