BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZA09RM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig488                                                          938   0.0  

>3x_Contig488 
          Length = 1926

 Score =  938 bits (473), Expect = 0.0
 Identities = 528/541 (97%), Gaps = 4/541 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 659

                                                                        
Query: 107  aatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatattttac 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  aatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatattttac 719

                                                                        
Query: 167  cattgatatccagtcctacagcggaattgccttgatgtgattgttttttccttcttggcg 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  cattgatatccagtcctacagcggaattgccttgatgtgattgttttttccttcttggcg 779

                                                                        
Query: 227  cacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattctt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  cacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattctt 839

                                                                        
Query: 287  ctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgatg 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  ctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgatg 899

                                                                        
Query: 347  gattcgcattcctgttcttccgtagttctttacaatgagcacaagttcggtgacggccta 406
            ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 900  gattcgcattcctgttcttccgtagttctttacaatgagcacaag-tcgttgacggccta 958

                                                                        
Query: 407  cctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  cctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgt 1018

                                                                        
Query: 467  cctctaatacaccttttacaggcatatttcacaccgttgataataaccatttgtgttgct 526
            |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 1019 cctctaatacacctttcacaggcatatttcacaccgttgataagaacca-ttgtg-tgct 1076

                                                                        
Query: 527  attttgaatgcgattcataatgtgtctgtgctgtctttacggaataattaccacaaaaaa 586
            | |||||||||||| || ||||||||||||||||||| |  ||||||| |||||||||||
Sbjct: 1077 a-tttgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaa 1135

             
Query: 587  a 587
            |
Sbjct: 1136 a 1136


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7181
Number of Sequences: 1807
Number of extensions: 7181
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)