BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA10FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig88 973 0.0
>3x_Contig88
Length = 1299
Score = 973 bits (491), Expect = 0.0
Identities = 586/611 (95%), Gaps = 5/611 (0%)
Strand = Plus / Plus
Query: 86 ttgtatccaacccataaggtttaataagaattctttccccagaacgagattttgattcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgtatccaacccataaggtttaataagaattctttccccagaacgagattttgattcaa 742
Query: 146 gagtagttgcatctaataaatctagttcaggaggattattcaattggaaacaacggtagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gagtagttgcatctaataaatctagttcaggaggattattcaattggaaacaacggtagc 802
Query: 206 tcgagaattgatttttatttgccgaagtagcaggagatggtcgacatactagtaaatatt 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcgagaattgaagaacatttgccgaagtagcaggagatggtcgacatactagtaaatatt 862
Query: 266 ccgaaaataggtagcaaacctggtgttggaaatttatgccatctaatgatatcaaaaaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccgaaaataggtagcaaacctggtgttggaaatttatgccatctaatgatatcaaaaaat 922
Query: 326 tatctatcaatcgtaagagtccatatttagcatcaatttcccaaggcttgacttcgctaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tatctatcaatcgtaagagtccatatttagcatcaatttcccaaggcttgacttcgctaa 982
Query: 386 aactattcaaaaacgcttgaatgaaatactgcctttgaacgtgcaaagaaggcagttgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 aactattcaaaaacgcttgaatgaaatactgcctttgaacgtgcaaagaaggcagttgac 1042
Query: 446 agtcatctttcgaggaagatgatacgatggacgacaagccagaaaccgtacttcctctga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 agtcatctttcgaggaagatgatacgatggacgacaagccagaaaccgtacttcctctga 1102
Query: 506 agttggatcttttttttatactgcgactcctatgcaaacggatggaatctcgaagagatg 565
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 agttggatcttctttttatactgcgactcctatgcaaacggatggaatctcgaagagatg 1162
Query: 566 gagtaaccgtttttcctggtttaaaagaaaatgccaaaggatacctgatatcggtatttt 625
||||||||||||| |||||||| ||||||||||| ||| ||||||||||| || |||
Sbjct: 1163 gagtaaccgttttccctggtttcaaagaaaatgcaaaaaataacctgatatcgtta-ttt 1221
Query: 626 cttgcaatttgttctattagtctggaaatggtgaaaaccgttcatcattaccctgagtgc 685
||||| | |||||||| ||||||| |||| ||| |||| |||||||||| ||||||||
Sbjct: 1222 cttgc-agttgttctagtagtctgcaaat-gtggaaacgtttcatcatta-cctgagtg- 1277
Query: 686 cttgggtaaga 696
|||||||||||
Sbjct: 1278 cttgggtaaga 1288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7588
Number of Sequences: 1807
Number of extensions: 7588
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)