BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA10RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig471 1074 0.0
>3x_Contig471
Length = 2964
Score = 1074 bits (542), Expect = 0.0
Identities = 584/597 (97%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 49 gctttcatcgttggtgaaagtcgattcaagatcattttcaggttcttctgataaattagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 gctttcatcgttggtgaaagtcgattcaagatcattttcaggttcttctgataaattagt 2407
Query: 109 cttgcctaagcgaattttcttcggcagcaggagctgctgattcactgtttgctgcattct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 cttgcctaagcgaattttcttcggcagcaggagctgctgattcactgtttgctgcattct 2347
Query: 169 tcttcttcttcttcttcttgtttttattcttgttgctagacttagaagcaggctctttca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2346 tcttcttcttcttcttcttgtttttattcttgttgctagacttagaagcaggctcgttca 2287
Query: 229 cgtcttgagtatcaccttcatgctcggcttcatctttatctttagcctcgtctttggctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 cgtcttgagtatcaccttcatgctcggcttcatctttatctttagcctcgtctttggctt 2227
Query: 289 cagctgaggcttcagctgaggcttcaggtgtctcttcagcctcttcagccttagtaggtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 cagctgaggcttcagctgaggcttcaggtgtctcttcagcctcttcagccttagtaggtt 2167
Query: 349 cattttcagctacatcttcagaattttcttcgatgacaggttcactttcttcaatttctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 cattttcagctacatcttcagaattttcttcgatgacaggttcactttcttcaatttctt 2107
Query: 409 ccttgacactttcttcaattacttctttgacaaccggttctgtttcctgagctggctctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2106 ccttgacactttcttcaattacttctttgacaaccggttctgtttcctgagctggctctt 2047
Query: 469 cttcctgagctggctcttcttcctgagctggctcttcttcctgagctggctctttttcct 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2046 cttcctgagctggctcttcttcctgagctggctcttcttcctgagctggctcttcttcct 1987
Query: 529 gagctggctcttcttcttgagcttgtttattctcttcctccgccgacccttaanaactaa 588
||||||||||||||||||||||| |||||| ||||||||| ||||| || | | ||||||
Sbjct: 1986 gagctggctcttcttcttgagctggtttatcctcttcctcggccgaaccctcagaactaa 1927
Query: 589 cctgctgttcgttcacaggactgttttcaacagcggaatggtttcgaattacccttg 645
|||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct: 1926 cctgctgtccgttcacaggactggtttcaacagcggaatgg-ttcgaatcacccttg 1871
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,112
Number of Sequences: 1807
Number of extensions: 35112
Number of successful extensions: 1010
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)