BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZA11FM1.SCF screened BAC_end (1047 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1486 248 2e-65 >3x_Contig1486 Length = 12131 Score = 248 bits (125), Expect = 2e-65 Identities = 190/209 (90%), Gaps = 2/209 (0%) Strand = Plus / Minus Query: 87 taacactcgagggcacccattcatcgtcatcaatggacttaaaaccaaattgttccgagg 146 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9373 taacacttgagggcacccattcatcgtcatcaatggacttaaaaccaaattgttccgagg 9314 Query: 147 tctcgaaatactggaacaaattttttttattcacctcctataacggtcaattttgatttc 206 |||||||||||||||||||| | || |||||||||| ||||||||||||||||||||| Sbjct: 9313 tctcgaaatactggaacaaa-tagttagattcacctcccataacggtcaattttgatttc 9255 Query: 207 tgcgccaacttcagtgacttatcggagaacatcgtcttagcatagtccatacagacgttc 266 || ||||| || ||||||||||||||||| || | |||||||||||||||||||||| Sbjct: 9254 tgttccaacgacattgacttatcggagaacaacg-caaagcatagtccatacagacgttc 9196 Query: 267 cttggatttatctgggtgattatacccgg 295 |||| |||||||||||| || |||||||| Sbjct: 9195 cttgtatttatctgggtcatcatacccgg 9167 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4606 Number of Sequences: 1807 Number of extensions: 4606 Number of successful extensions: 24 Number of sequences better than 1.0e-20: 1 length of query: 1047 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1031 effective length of database: 10,329,639 effective search space: 10649857809 effective search space used: 10649857809 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)