BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZA11FM1.SCF screened BAC_end
         (1047 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1486                                                         248   2e-65

>3x_Contig1486 
          Length = 12131

 Score =  248 bits (125), Expect = 2e-65
 Identities = 190/209 (90%), Gaps = 2/209 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   taacactcgagggcacccattcatcgtcatcaatggacttaaaaccaaattgttccgagg 146
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 taacacttgagggcacccattcatcgtcatcaatggacttaaaaccaaattgttccgagg 9314

                                                                        
Query: 147  tctcgaaatactggaacaaattttttttattcacctcctataacggtcaattttgatttc 206
            |||||||||||||||||||| |  ||  |||||||||| |||||||||||||||||||||
Sbjct: 9313 tctcgaaatactggaacaaa-tagttagattcacctcccataacggtcaattttgatttc 9255

                                                                        
Query: 207  tgcgccaacttcagtgacttatcggagaacatcgtcttagcatagtccatacagacgttc 266
            ||  |||||  || ||||||||||||||||| || |  ||||||||||||||||||||||
Sbjct: 9254 tgttccaacgacattgacttatcggagaacaacg-caaagcatagtccatacagacgttc 9196

                                         
Query: 267  cttggatttatctgggtgattatacccgg 295
            |||| |||||||||||| || ||||||||
Sbjct: 9195 cttgtatttatctgggtcatcatacccgg 9167


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4606
Number of Sequences: 1807
Number of extensions: 4606
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 1047
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1031
effective length of database: 10,329,639
effective search space: 10649857809
effective search space used: 10649857809
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)