BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA11RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1592 1049 0.0
>3x_Contig1592
Length = 12307
Score = 1049 bits (529), Expect = 0.0
Identities = 622/645 (96%), Gaps = 6/645 (0%)
Strand = Plus / Minus
Query: 22 ctttgattaatgaggaaccgtctatgcctctctgtcatgatcctgcagccaatgctgggg 81
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3136 ctttgattaatgaggaaccgtcgatgcctctctgtcatgatcctgcagccaatgctgggg 3077
Query: 82 cttcggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattattc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3076 cttcggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattattc 3017
Query: 142 cttctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacatc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3016 cttctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacatc 2957
Query: 202 cacgttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaat 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2956 cacgttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaat 2897
Query: 262 gttcggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcata 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 gttcggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcata 2837
Query: 322 tgcaatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaacg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2836 tgcaatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaacg 2777
Query: 382 gtttcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatcttt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2776 gtttcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatcttt 2717
Query: 442 ttcgaatggataattacgaactcctcattcctgaagaaacttaaattacatggattccga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2716 ttcgaatggataattacgaactcctcattcctgaagaaacttaaattacatggatcacga 2657
Query: 502 attcaaagacaaaattaccaaattttcagtcctaaaagacttaataaaacttttataatt 561
|| |||||||||||| ||||||||||||||| ||||||||||||||||||||| | || |
Sbjct: 2656 atacaaagacaaaataaccaaattttcagtcttaaaagacttaataaaactttcagaa-t 2598
Query: 562 tatccctttttatattgagcatgtttcgaacttttttttttttgtcttcctttttttttc 621
|||||| | |||||||||||||| ||||||| |||||| |||||||| |||||| | ||
Sbjct: 2597 tatccc-tcttatattgagcatg-ttcgaac-ttttttcttttgtctcccttttatcatc 2541
Query: 622 gatcaataaaacgttttattttactttgtgtttttttcttttact 666
||||||||||||| ||||| ||||||| ||||||| ||||||||
Sbjct: 2540 gatcaataaaacg-cttattctactttg-gttttttccttttact 2498
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,269
Number of Sequences: 1807
Number of extensions: 16269
Number of successful extensions: 168
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)