BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA12FM1.SCF screened BAC_end
(1002 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 749 0.0
>3x_Contig1760
Length = 27266
Score = 749 bits (378), Expect = 0.0
Identities = 473/494 (95%), Gaps = 8/494 (1%)
Strand = Plus / Minus
Query: 104 tggacaacttcggtcatctaactaaattaggcagactgatgggtgccttccctttacagc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22906 tggacaacttcggtcatctaactaaattaggcagactgatgggtgccttccctttacagc 22847
Query: 164 cctttctttccagggtactaatatttgcatcacaatatggctgtaccgaacagatgttaa 223
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 22846 cctttctttccagggtactaataagtgcatcacaatatggctgtaccgaagagatgttaa 22787
Query: 224 cgattgtattttttttttcggctccgcctgtcttctataggccgaaggaacgtgaagaag 283
||||||||| | | |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 22786 cgattgtatctatgctttcggttccgtctgtcttctataggccgaaggaacgtgaagaag 22727
Query: 284 aatctgaccaagccagaagccggtttttcatccctgaatcagatcatttgaccctactta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22726 aatctgaccaagccagaagccggtttttcatccctgaatcagatcatttgaccctactta 22667
Query: 344 acgtgtatgctcaatggaaagccaacagatattctgcccattggtgtaattcaccgcttc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 22666 acgtgtatgctcaatggaaagccaacagatattctgcccattggtgtaattca-cgcttc 22608
Query: 404 ttacaattcagatctctccaaacagctaaagacattcgagaacagttactctatgtgata 463
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 22607 ttacaattcagatctctccaaagagctaaagacattcgagaacagttactctatgtgata 22548
Query: 464 agaaaattgaatttaccgatgggttcttctgggttcagactgggcttccaataagaaaaa 523
|||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||
Sbjct: 22547 agaaaattgaatttaccgatggcttcttctggg-tcagactgggc-tccaataag-aaaa 22491
Query: 524 tgtttatgcaccggttacatcccaacagaccggccaaactattcaggggttaggcaaata 583
||| |||||||||||||||| |||||||| | ||||||||| ||| ||||||||||||||
Sbjct: 22490 tgtctatgcaccggttacat-ccaacaga-ctgccaaacta-tca-gggttaggcaaata 22435
Query: 584 tgttcatttaaaaa 597
||||||||||||||
Sbjct: 22434 tgttcatttaaaaa 22421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7694
Number of Sequences: 1807
Number of extensions: 7694
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 1002
length of database: 10,358,551
effective HSP length: 16
effective length of query: 986
effective length of database: 10,329,639
effective search space: 10185024054
effective search space used: 10185024054
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)