BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZA12RM1.SCF screened BAC_end
(1044 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig848 870 0.0
3x_Contig419 535 e-152
>3x_Contig848
Length = 3091
Score = 870 bits (439), Expect = 0.0
Identities = 446/447 (99%), Gaps = 1/447 (0%)
Strand = Plus / Minus
Query: 79 cttcgaagaag-cagatgcacttggtttatcaccaattgggaacaaagcgatccagaatt 137
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttcgaagaaggcagatgcacttggtttatcaccaattgggaacaaagcgatccagaatt 388
Query: 138 gggccatcaagatcaaaataatcaatacgaaaccgtatacggaaccccatacaccagttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggccatcaagatcaaaataatcaatacgaaaccgtatacggaaccccatacaccagttg 328
Query: 198 gtgcggtgaaactgagttcagcagtggttctgttttgtgcggccaaagctcttctaactc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgcggtgaaactgagttcagcagtggttctgttttgtgcggccaaagctcttctaactc 268
Query: 258 tgatgtgacaaagcatgataccaccccatgtaaacaaagaggacaaaccagacaacgcca 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgatgtgacaaagcatgataccaccccatgtaaacaaagaggacaaaccagacaacgcca 208
Query: 318 ataaccagtcgaatacttcaccttcctttggagatgcagcaatgaaggataacaaaccaa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ataaccagtcgaatacttcaccttcctttggagatgcagcaatgaaggataacaaaccaa 148
Query: 378 agacacaagtgacaataataccgaccaatggtctaccggttctgtcaatgtaaccaaaaa 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agacacaagtgacaataataccgaccaatggtctaccggttctgtcaatgtaaccaaaaa 88
Query: 438 tctttggtaaagaaccttggttagccaatgcagccatggatcttgagcaagcaaaaacag 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tctttggtaaagaaccttggttagccaatgcagccatggatcttgagcaagcaaaaacag 28
Query: 498 cagagttaccaacagatagaacagcaa 524
|||||||||||||||||||||||||||
Sbjct: 27 cagagttaccaacagatagaacagcaa 1
>3x_Contig419
Length = 1943
Score = 535 bits (270), Expect = e-152
Identities = 360/382 (94%), Gaps = 6/382 (1%)
Strand = Plus / Plus
Query: 221 gtggttctgttttgtgcg-gccaaagctcttctaactctgatgtgacaaagcatgatacc 279
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct: 1 gtggttctgttttgtgccagccaaagctcttctaactctgatgtgacatagcaaaatacc 60
Query: 280 accccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttcacc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttcacc 120
Query: 340 ttcctttggagatgcagcaatgaaggataacaaaccaaagacacaagt-gacaataatac 398
||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | |||||
Sbjct: 121 ttcctttggagatgcagcaatgaaggatagcaaaccaaagacgcaagtcgaccacaatac 180
Query: 399 cgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaaccttggt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaaccttggt 240
Query: 459 tagccaatgcagccatggatcttgagcaagcaaaaacagcagagttaccaacagatagaa 518
|||||||||||||||| |||||||| ||| |||| ||||| | ||||||||||||||||
Sbjct: 241 tagccaatgcagccattgatcttgaacaaccaaagacagcgcaattaccaacagatagaa 300
Query: 519 cagcaatcaagataacaacgtttgatcacagaaggttaacctttaataccgggcattttg 578
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct: 301 cagcaatcaagataacaacg-ttgatcacagaaggtaaacctttaatacc-ggcattttg 358
Query: 579 aatgggaaataaacgaatgggg 600
||| |||||| |||||||||||
Sbjct: 359 aat-ggaaat-aacgaatgggg 378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6990
Number of Sequences: 1807
Number of extensions: 6990
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 1044
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1028
effective length of database: 10,329,639
effective search space: 10618868892
effective search space used: 10618868892
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)