BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB02FM1.SCF screened BAC_end
         (995 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1516                                                         936   0.0  

>3x_Contig1516 
          Length = 8750

 Score =  936 bits (472), Expect = 0.0
 Identities = 495/503 (98%)
 Strand = Plus / Minus

                                                                        
Query: 89   cgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagtaccttcgt 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 cgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagtaccttcgt 5015

                                                                        
Query: 149  tgttgacaccatcttcttcaccacctgtgataccgatttccatttccaaccattggtgga 208
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5014 tgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccattggtgga 4955

                                                                        
Query: 209  tcttggccattcttgngatgtatttgacacatagaccaatgttttcctcatcagtttctt 268
            ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 tcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatcagtttctt 4895

                                                                        
Query: 269  cggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaagtattctt 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 cggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaagtattctt 4835

                                                                        
Query: 329  cgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatgatcggtgt 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834 cgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatgatcggtgt 4775

                                                                        
Query: 389  gtagaacaactgggataccgtaagctggagcaatggatctgatgtagtgagcagcagcga 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 gtagaacaactgggataccgtaagctggagcaatggatctgatgtagtgagcagcagcga 4715

                                                                        
Query: 449  tagaacctctgatagaagcattttggccttcgttggaaacacccttaccagcaaagtaag 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4714 tagaacctctgatagaagcattttggccttcgttggaaacacccttaccagcaaagtaag 4655

                                                                        
Query: 509  cagcaccaccgttggaagtttgcaaaatgattggagatttggtgcctctagcagcttcca 568
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 4654 cagcaccaccgttggaagtttgcaaaatgattggagatttgttgtctctagcagcttcca 4595

                                   
Query: 569  aagcagcaacatcattggaagaa 591
            ||||||||||| || ||||||||
Sbjct: 4594 aagcagcaacaacagtggaagaa 4572


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7983
Number of Sequences: 1807
Number of extensions: 7983
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)