BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1142 0.0
>3x_Contig1594
Length = 9813
Score = 1142 bits (576), Expect = 0.0
Identities = 693/724 (95%), Gaps = 6/724 (0%)
Strand = Plus / Minus
Query: 50 aaactgtatttcttatcttttgtacattatcttgcgtccttctttctatcgtctgcatgc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 aaactgtatttcttatcttttgtacattatcttgcgtccttctttctatcgtctgcatgc 2030
Query: 110 cataatatttgaaaaat-aatgattcttgcttgattcttaggaccatatatctttatgca 168
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 cataatatttgaaaaatcaatgattcttgcttgattcttaggaccatatatctttatgca 1970
Query: 169 acacaaaataaggaagtacaggtagtttctcctactgacgagatagcaccttaaaattaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 acacaaaataaggaagtacaggtagtttctcctactgacgagatagcaccttaaaattaa 1910
Query: 229 ctataacgtagtacaggatgtcatccagtgtacaatctggggtcatcacacttcttcata 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 ctataacgtagtacaggatgtcatccagtgtacaatctggggtcatcacacttcttcata 1850
Query: 289 cggcatgcggggctggtatccttgcaatgccttatgcttttaaaccctttggattgattt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 cggcatgcggggctggtatccttgcaatgccttatgcttttaaaccctttggattgattt 1790
Query: 349 tgggtttgtcaatgattatattctgcggcttgtgttcctctacggggttatatttacaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 tgggtttgtcaatgattatattctgcggcttgtgttcctctacggggttatatttacaat 1730
Query: 409 catacgtgtcgaaatacgttcctcctggacatgcctcgtttttcactctttgcagattaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 catacgtgtcgaaatacgttcctcctggacatgcctcgtttttcactctttgcagattaa 1670
Query: 469 ctcgtcctgaattgagcgtcgttttcgatgctgcaattgctgttaaatgttttggggtcg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 ctcgtcctgaattgagcgtcgttttcgatgctgcaattgctgttaaatgttttggggtcg 1610
Query: 529 gagtttcatatttggtggtcgttggagatttgttaccacagataatgttcacgtttacaa 588
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1609 gagtttcatatttggtggtcgttggagatttgttaccacagataatgtccacgtttacaa 1550
Query: 589 cccatgggtggctctttatacgccagtttcacattactgcagttacgtttgatcatcgtt 648
|||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1549 cccatgggtggctcttatcacgccagtttcacatcactgcagttacg-ttgatcatcgtg 1491
Query: 649 acaccggttgtg-ttcatttaatattttgactctctaagggaccctcctttccttgcaat 707
||||| |||||| |||||| | | || |||||| ||||| || || ||| | |||||||
Sbjct: 1490 acacc-gttgtgtttcattaagaagttagactctttaaggtacacttcttccattgcaat 1432
Query: 708 tccaccaatggggaccttatgcgttttaattgtccttccattcttgccgttccaaatagc 767
| || || | ||| ||||||||| ||| |||| |||||||| |||||||||||||||||
Sbjct: 1431 tacagcagttgggtacttatgcgtattagttgt-cttccatt-ttgccgttccaaatagc 1374
Query: 768 gaaa 771
||||
Sbjct: 1373 gaaa 1370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5548
Number of Sequences: 1807
Number of extensions: 5548
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)