BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB03FM1.SCF screened BAC_end
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 658 0.0
>3x_Contig1648
Length = 16375
Score = 658 bits (332), Expect = 0.0
Identities = 421/452 (93%)
Strand = Plus / Plus
Query: 116 aagcttgtgactaagggcccagagaacacagaagaattaactaatgaagctaatgaattc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8593 aagcttgtgactaagggcccagagaacacagaagaattaactaatgaagctaatgaattc 8652
Query: 176 aagattttttggggtaaaaaagcatctctttttagattcaaggacggttccattgcaaac 235
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8653 aagattttttggggtaaaaaagcatctcttcgtagattcaaggacggttccattgcaaac 8712
Query: 236 tgctgtgtctggtcttttttttttttagaaagcgnngctttttcgattttgtcctatgtt 295
|||||||||||||| || | | | ||||| | | || |||||||||||||||||||
Sbjct: 8713 tgctgtgtctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcctatgtt 8772
Query: 296 ctaaggctacatttgactgaagactgcaaactcatcaataattccactagccaattccaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8773 ctaaggctacatttgactgaagactgcaaactcatcaataattccactagccaattccaa 8832
Query: 356 cagttgntaccactaccgaacctacctgcatcttcaaagacatcagctctaaacctatca 415
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8833 cagttgttaccactaccgaacctacctgcatcttcaaagacatcagttctaaacctatca 8892
Query: 416 agctactataacttgaagaagccctttgacgacttgnataaaatcatgttcgagctaaaa 475
||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct: 8893 agctactataacttgaagaagtcctttgacgatttgtataaaatcatgttcgagctaaaa 8952
Query: 476 ctcccattatcaattaaaccttttttacctattgggtctgcattcaagtccacatcattt 535
|||||||||||||||||| || ||||||||||||| |||||||||| || |||||||||
Sbjct: 8953 ctcccattatcaattaaatctcttttacctattggttctgcattcaggtacacatcatta 9012
Query: 536 agtcaccctggcccatacccattttctaatcc 567
|||| |||| ||||||| ||| |||||||||
Sbjct: 9013 tgtcagcctgtcccatacgcatattctaatcc 9044
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,497
Number of Sequences: 1807
Number of extensions: 14497
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)