BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB03RM1.SCF screened BAC_end
(1250 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 767 0.0
>3x_Contig1624
Length = 12551
Score = 767 bits (387), Expect = 0.0
Identities = 428/439 (97%), Gaps = 2/439 (0%)
Strand = Plus / Plus
Query: 83 atatttatcctttgtacataatgctttgacagaattgtctttaatttagtttctgttaaa 142
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11126 atatttatcctttg-acataatgctttgacagaattgtctttaatttagtttctgttaaa 11184
Query: 143 aagaagagatcggaaagaaagacaattgcactttctttagtacctgctttagcaatcaac 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11185 aagaagagatcggaaagaaagacaattgcactttctttagtacctgctttagcaatcaac 11244
Query: 203 tcagtcaactattctattaccaatttcccaatgagttctgcaggatatttttaattaaga 262
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 11245 tcagtcaactattctattaccaatttcccaatgagttctgcaggagatcaataattaaga 11304
Query: 263 gttataccaacagatcttgattccagtataaaaaaactctgcgattctttttaggagcaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11305 gttataccaacagatcttgattccagtataaaaaaactctgcgattctttttaggagcaa 11364
Query: 323 gacgtaggatctcttgatcaacttgctttctgctatcactgtctctaccgatagcaatgt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11365 gacgtaggatctcttgatcaacttgctttctgctatcactgtctctaccgatagcaatgt 11424
Query: 383 cttcaccgctggcgatactcttggtagtatgtttcctatcgactattgtcaactatggac 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11425 cttcaccgctggcgatactcttggtagtatgtttcctatcgactattgtcaactatggac 11484
Query: 443 tgggattgttcaaagcttaaacctttttattgaaataaggaatctgaaaagcttggatcc 502
||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 11485 tgggattgttcaaagctaaaacctctttattgaaataatgaatctgaaaagcttggat-c 11543
Query: 503 agatgcagattggatttgg 521
|||| |||||| |||||||
Sbjct: 11544 agattcagattcgatttgg 11562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6116
Number of Sequences: 1807
Number of extensions: 6116
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 1250
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1234
effective length of database: 10,329,639
effective search space: 12746774526
effective search space used: 12746774526
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)