BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB04FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig583 1176 0.0
>3x_Contig583
Length = 2545
Score = 1176 bits (593), Expect = 0.0
Identities = 616/621 (99%), Gaps = 2/621 (0%)
Strand = Plus / Minus
Query: 86 accatcacgaagctcgtcgactttacaatccactaacgatgcaaattccttattaccacg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accatcacgaagctcgtcgactttacaatccactaacgatgcaaattccttattaccacg 566
Query: 146 gtatatttcaccagtacgtctccataaacatgctggcatggacatggatgtgaaaacacg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtatatttcaccagtacgtctccataaacatgctggcatggacatggatgtgaaaacacg 506
Query: 206 gtcatatgatagt-gtattctttcaaaactttcttctaccaacacaagatccacatcctt 264
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcatatgaaagtagcattctttcaaaactttcttctaccaacacaagatccacatcctt 446
Query: 265 caatgatctagcgatagcacggaaagctggacgaattatagatagaggctttaagattct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatgatctagcgatagcacggaaagctggacgaattatagatagaggctttaagattct 386
Query: 325 ttgcttagatgattgattcatatatttgtccataaatttttgtaaccgcgaatatccctt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcttagatgattgattcatatatttgtccataaatttttgtaaccgcgaatatccctt 326
Query: 385 ggcgtagttatacggctgtagtagaccagcctctaacttagcattgatgactagtttaag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcgtagttatacggctgtagtagaccagcctctaacttagcattgatgactagtttaag 266
Query: 445 tctgtcttctggattaatttctgtggacggatctgcagcagtaaggaagaaattttcctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtcttctggattaatttctgtggacggatctgcagcagtaaggaagaaattttcctt 206
Query: 505 tggggtcggttgttgatcatcgggcagaagaggcggtgacattcctcctgcattttgcac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tggggtcggttgttgatcatcgggcagaagaggcggtgacattcctcctgcattttgcac 146
Query: 565 gttgctgtgcactggtgattgcatttgtgtgtgcattggatgttgcgaattgttcatatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gttgctgtgcactggtgattgcatttgtgtgtgcattggatgttgcgaattgttcatatt 86
Query: 625 gttgggctgcgtggtaacttcatgtgctacaagtggctgctgagagtgatattcggggtt 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 85 gttgggctgcgtggtaacttcatgtgctacaagtggctgctgagagtgatattc-gggtt 27
Query: 685 ggtcgtttgcttgcgccgggt 705
||||| |||||||||||||||
Sbjct: 26 ggtcggttgcttgcgccgggt 6
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5895
Number of Sequences: 1807
Number of extensions: 5895
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)