BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB05FM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1698                                                         967   0.0  

>3x_Contig1698 
          Length = 21001

 Score =  967 bits (488), Expect = 0.0
 Identities = 553/570 (97%), Gaps = 4/570 (0%)
 Strand = Plus / Plus

                                                                         
Query: 88    aaccatccagttccgacctaaaattagatgcgaattcctagattccagaagggctgtcca 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18413 aaccatccagttccgacctaaaattagatgcgaattcctagattccagaagggctgtcca 18472

                                                                         
Query: 148   tttatcttgagcccagacggcccatgctaatcgccttcgtagtccacgttcccagcgagg 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18473 tttatcttgagcccagacggcccatgctaatcgccttcgtagtccacgttcccagcgagg 18532

                                                                         
Query: 208   taatctccagnnct-actttcaacaccgaggccaagttcctctgacaaagcaacaacttc 266
             ||||||||||   | ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18533 taatctccagtcttgacaatcaacaccgaggccaagttcctctgacaaagcaacaacttc 18592

                                                                         
Query: 267   cgaacatagtacccaattgttgggacattcactacgacaatgcaaaattagtaaacctgc 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18593 cgaacatagtacccaattgttgggacattcactacgacaatgcaaaattagtaaacctgc 18652

                                                                         
Query: 327   ttggacaatgcttaatttgggtctttcaaacacctcgtagaaagtttttaatgcaatatc 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18653 ttggacaatgcttaatttgggtctttcaaacacctcgtagaaagtttttaatgcaatatc 18712

                                                                         
Query: 387   attcaattgattcgcaacatctggtttaggaaaaccaatcaattgcgggtggaaatccca 446
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18713 attcaattgattcgcaacatctggtttaggaaaaccaatcaattgcgggt-gaaatccca 18771

                                                                         
Query: 447   ccattgtaaagctagggaataaatggatgcaagaattggcgccgtgagttcacgattaga 506
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 18772 ccattgtaaagctagggaataaatggatgcaagaattggcgccgtgagttcacgataaga 18831

                                                                         
Query: 507   tcttgagtacttctcc-aaaatacttcttcgtgtagaatgggaaagttatgatgaatcag 565
             |||||||||||||||| ||||||||  |||||||||||||||||||| | ||||||||||
Sbjct: 18832 tcttgagtacttctccaaaaatactcgttcgtgtagaatgggaaagtaaggatgaatcag 18891

                                                                         
Query: 566   tttaaagaaaatttcaaccaatattttaccatgaggatgcactattttttccactaaatc 625
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 18892 tttaaagaaaatttcaaccaatattttaccatgaggatgcactagtttttccactaaatc 18951

                                           
Query: 626   tatattacgtttctggcttcaagtaaagtt 655
             ||||| ||| |||| |||||||||||||||
Sbjct: 18952 tatatcacg-ttcttgcttcaagtaaagtt 18980


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7815
Number of Sequences: 1807
Number of extensions: 7815
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)