BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB05RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig801 1235 0.0
>3x_Contig801
Length = 2608
Score = 1235 bits (623), Expect = 0.0
Identities = 649/655 (99%), Gaps = 2/655 (0%)
Strand = Plus / Plus
Query: 44 cttcacgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttcacgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttg 180
Query: 104 taattgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taattgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaa 240
Query: 164 cggaacggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcaatcagaag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cggaacggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcaatcagaag 300
Query: 224 tttcaagcaattctgtaacggaatgaaagcaacgttccagatacaacaggtttcatatct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcaagcaattctgtaacggaatgaaagcaacgttccagatacaacaggtttcatatct 360
Query: 284 tccatctatgatcaaggtgaaagaattttgctcgttaaagtagtgccatactttcactga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccatctatgatcaaggtgaaagaattttgctcgttaaagtagtgccatactttcactga 420
Query: 344 actgtcactgtatactgtagccattatgaaatcgcaagtgtcaccattcaaaaatagcac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actgtcactgtatactgtagccattatgaaatcgcaagtgtcaccattcaaaaatagcac 480
Query: 404 atcgaaatccattatccgaaggtctggattgttcatagaagggattagtttctgtttcaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcgaaatccattatccgaaggtctggattgttcatagaagggattagtttctgtttcaa 540
Query: 464 attcacatatggatgagagaattgatcattcaattcccataagaatagctcttcccttgc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attcacatatggatgagagaattgatcattcaattcccataagaatagctcttcccttgc 600
Query: 524 actacacgtaatgaaaaaattgtcacagatgaatttgcatcgttgtaagccggacacatg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actacacgtaatgaaaaaattgtcacagatgaatttgcatcgttgtaagccggacacatg 660
Query: 584 agatttcagagtccagaaattttgaatagctccggtttttgaa-tgatagaagac-attt 641
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 661 agatttcagagtccagaaattttgaatagctccggtttctgaattgatagaagacaattt 720
Query: 642 aactgctgggtcttctgatccagtaataaatagtaggttttcctttcaatagttt 696
||||| || |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 721 aactgttgtgtcttctgatccagtaataaatagtaggttttccttacaatagttt 775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7433
Number of Sequences: 1807
Number of extensions: 7433
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)