BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB06FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 751 0.0
>3x_Contig1771
Length = 25932
Score = 751 bits (379), Expect = 0.0
Identities = 423/434 (97%), Gaps = 4/434 (0%)
Strand = Plus / Plus
Query: 36 aaaaaaacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagcaagtgaca 95
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18870 aaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagcaagtgaca 18929
Query: 96 tttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttacaaaattaa 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18930 tttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttacaaaataaa 18989
Query: 156 tgattgtaggtatataaaaataatttataggtagaaacacacaaaacagaagagaggtag 215
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18990 agagtgtaggtatataaaaataatttataggtagaaacacacaaaacagaagagaggtag 19049
Query: 216 aagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaagaaaagaacg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19050 aagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaagaaaagaacg 19109
Query: 276 aggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatattaaaaatt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19110 aggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatattaaaaatt 19169
Query: 336 gatcaattagaaacaaatgaatatggtttgttcgtcttccctcttctttttttttggatc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19170 gatcaattagaaacaaatgaatatggtttgttcgtcttccctcttctttttttttggatc 19229
Query: 396 tttactttctgccaattaacggttgtaaacaattcccatcggcctaaaaataattattcc 455
||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct: 19230 tttac-ttctgccaattaacggttgtaaacaattcccatc-gcctaataataat--atcc 19285
Query: 456 tcaaagcttagtcc 469
|||||||| |||||
Sbjct: 19286 tcaaagctcagtcc 19299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,552
Number of Sequences: 1807
Number of extensions: 15552
Number of successful extensions: 169
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)