BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB06RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1565                                                        1122   0.0  

>3x_Contig1565 
          Length = 10922

 Score = 1122 bits (566), Expect = 0.0
 Identities = 630/649 (97%), Gaps = 3/649 (0%)
 Strand = Plus / Plus

                                                                        
Query: 27   tacttattttgcttgcctttttcgagctactgtttcctaaatgcgcattgtatatacatc 86
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5663 tacttattttgcttgcctttttcgagctactgtttcctaaatgcgcattgtatatacatc 5722

                                                                        
Query: 87   agagatgaccgccttttttctttttgcaatacaccgggaaaaagcctcagtcgacactga 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5723 agagatgaccgccttttttctttttgcaatacaccgggaaaaagcctcagtcgacactga 5782

                                                                        
Query: 147  aatcgtacagcatacgtggtccaaagggtgatactcctttaggctttgtcttttaggtcc 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5783 aatcgtacagcatacgtggtccaaagggtgatactcctttaggctttgtcttttaggtcc 5842

                                                                        
Query: 207  gctgattactatcattcgaggaaaatagtatatacgttcccggaatgattttctcagccg 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5843 gctgattactatcattcgaggaaaatagtatatacgttcccggaatgattttctcagccg 5902

                                                                        
Query: 267  gcattccgataaaagtcagaatagataggagggaggagaagcagctagagatagaagtaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5903 gcattccgataaaagtcagaatagataggagggaggagaagcagctagagatagaagtaa 5962

                                                                        
Query: 327  atgtaggggaaggaagaaacgagttagtgcaaaatcaaagcgctgcaaactctcaacgcg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5963 atgtaggggaaggaagaaacgagttagtgcaaaatcaaagcgctgcaaactctcaacgcg 6022

                                                                        
Query: 387  ccacttctgctttaagaagaagcagaagaaagtatacgaaaggcggaaaatcagctcgtt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023 ccacttctgctttaagaagaagcagaagaaagtatacgaaaggcggaaaatcagctcgtt 6082

                                                                        
Query: 447  tccaggcttcctgtaagcttcattgataagcttctgtccattaaatctactggaataaaa 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6083 tccaggcttcctgtaagcttcattgataagcttctgtccattaaatctactggaataaaa 6142

                                                                        
Query: 507  cgctcagtttca-tttgtaagaaaaaaaaaagacttatttcgaccaatgagagcggttca 565
            |||||||||||| || | |||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 6143 cgctcagtttcagttggaaagaaaaaaaaaagacatattccgaccaatgagagcggttca 6202

                                                                        
Query: 566  tataattttgaagaggcgtaatattgagagggacaacaaactttttaccaacccattctt 625
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 6203 gataattttgaagaagcgtaatattgagagggacaacaaactttttaccaacccatttct 6262

                                                             
Query: 626  tggtgggaacttttcctttacctaagggaaatggcaaaaaaataaaaaa 674
            || || || ||||  | |||||||| |||||| ||||||| | ||||||
Sbjct: 6263 tgttgtgatcttt--ccttacctaaaggaaattgcaaaaagaaaaaaaa 6309


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9412
Number of Sequences: 1807
Number of extensions: 9412
Number of successful extensions: 137
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)