BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB07FM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1711                                                        1134   0.0  

>3x_Contig1711 
          Length = 15491

 Score = 1134 bits (572), Expect = 0.0
 Identities = 627/640 (97%), Gaps = 4/640 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   caacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatg 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7886 caacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatg 7827

                                                                        
Query: 149  atccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcct 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7826 atccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcct 7767

                                                                        
Query: 209  ctgatgtgcattttgtttttcgacagtaaaggcaaagatatatgttttttttccttccag 268
            ||||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7766 ctgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgttttttttccttccag 7707

                                                                        
Query: 269  aaatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgc 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7706 aaatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgc 7647

                                                                        
Query: 329  atcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggc 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7646 atcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggc 7587

                                                                        
Query: 389  acttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatg 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7586 acttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatg 7527

                                                                        
Query: 449  gctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgttt 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7526 gctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgttt 7467

                                                                        
Query: 509  ttcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttca 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7466 ttcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttca 7407

                                                                        
Query: 569  ccataaccgacggcacgaagaaatttctttgtgccgtacgtaaagatcaatgtgtaatac 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7406 ccataaccgacggcacgaagaaatttctttgtgccgtacgtaaagatcaatgtgtcatac 7347

                                                                        
Query: 629  actggttcgcttcacagttgtatgtattgtaaaaattggacagcctaaaacaagtgggca 688
            ||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||
Sbjct: 7346 actggttcgcttcacagttgtatgtattgtaaaaa-tggacagcct-agacaggtgggca 7289

                                                    
Query: 689  gcgggggggcattcaagggcccataattgtggaggcgaca 728
            || |||| |||| |||||| ||||||||||||||||||||
Sbjct: 7288 gc-ggggcgcatccaaggg-ccataattgtggaggcgaca 7251


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7690
Number of Sequences: 1807
Number of extensions: 7690
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)