BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB07RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1354 0.0
>3x_Contig1806
Length = 53694
Score = 1354 bits (683), Expect = 0.0
Identities = 714/722 (98%), Gaps = 2/722 (0%)
Strand = Plus / Minus
Query: 48 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31544 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 31485
Query: 108 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31484 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 31425
Query: 168 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31424 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 31365
Query: 228 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31364 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 31305
Query: 288 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31304 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 31245
Query: 348 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31244 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 31185
Query: 408 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31184 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 31125
Query: 468 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31124 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 31065
Query: 528 caagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacatcttccctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31064 caagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacatcttccctt 31005
Query: 588 angtttagtcacttttcgtattggctatttttgttcattctatgctaagtgcatgggcta 647
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 31004 aggtttagtcacttttcgtattggcta-ttttgttcattctatgctaagtgcatgggcta 30946
Query: 648 ttgttacttcataactaatagttttcaacttgatgaactctgtgaatactgctcgagaaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 30945 ttgttacttcataactaatagttttcaacttgatgaactctgtgaatactgctcgag-aa 30887
Query: 708 tttgtttttgaaatcaaatttatacatacttctatcaggtactgtttgcatcattagcat 767
| || || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 30886 tatggttctgaaatcaattttatacatacttctatcaggtactgtttgcatcaatagcat 30827
Query: 768 ac 769
||
Sbjct: 30826 ac 30825
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7707
Number of Sequences: 1807
Number of extensions: 7707
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)