BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB08RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig351 926 0.0
>3x_Contig351
Length = 1152
Score = 926 bits (467), Expect = 0.0
Identities = 483/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 46 cttctagtcgtacgtgggaagagtgacatcttaaaagaagctcaacaaaatgcaatcacg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cttctagtcgtacgtgggaagagtgacatcttaaaagaagctcaacaaaatgcaatcacg 604
Query: 106 ttattctgctgcttattgcgttctcgtctagctacacgtagggtgattgaagaatacaga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttattctgctgcttattgcgttctcgtctagctacacgtagggtgattgaagaatacaga 664
Query: 166 ttgaacagacagacctttgattgggtgctaaacaatatcgaagcacaattcctaatatct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 665 ttgaacagacagacctttgattgggtgctaaacaatatcgaagcacaattcctaagatct 724
Query: 226 attgttcatccaggtgaaatggttggtgttttggctgctcaatccatcggtgagcctgcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 attgttcatccaggtgaaatggttggtgttttggctgctcaatccatcggtgagcctgcc 784
Query: 286 actcagatgacattgaatactttccatttcgctggtgtggcctccaagaaggttacttca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 actcagatgacattgaatactttccatttcgctggtgtggcctccaagaaggttacttca 844
Query: 346 ggtgttcctcgtttaaaggaaattttaaatgtcgccaaaaatatgaagaccccgtctctt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ggtgttcctcgtttaaaggaaattttaaatgtcgccaaaaatatgaagaccccgtctctt 904
Query: 406 actgtgtatttagatccatagtacgctgctgaccaagagaaggctaaagaaatccgttca 465
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 actgtgtatttagatccagagtacgctgctgaccaagagaaggctaaagaaatccgttca 964
Query: 466 gctattgaacacacaactttaaagagtgtcacccgtcgcatctgaaatttattatgaccc 525
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 965 gctattgaacacacaactttaaagagtgtca-ccgtcgcatctgaaatttattatgaccc 1023
Query: 526 ataccct 532
| |||||
Sbjct: 1024 agaccct 1030
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8762
Number of Sequences: 1807
Number of extensions: 8762
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)