BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB09FM1.SCF screened BAC_end
(1186 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 414 e-115
>3x_Contig1806
Length = 53694
Score = 414 bits (209), Expect = e-115
Identities = 240/249 (96%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 144 ttattaaagatcttccatattatcaatgcatcctaaatactttttgataagggcatgagt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35130 ttattaaagatcttccatattatcaatgcatcctaaatactttttgataagggcatgagt 35071
Query: 204 cgattttattcagataggatacttttaaatcctagatagtagtttgagtgtttgttattg 263
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 35070 cgattttattcagataggatacttcgaaatcctagatagtagtttgagtgtttgttattg 35011
Query: 264 atgctttcatttttttatatgagaagtagacagtagttgaatagttaaaaattgttgtgg 323
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35010 atgctttcatttatacatatgagaagtagacagtagttgaatagttaaaaattgttgtgg 34951
Query: 324 gagcacgaaaataatggatcatatatttacagttattctgaacttttgtttgagtttctg 383
|||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 34950 gagcacgaaaataagggatcaaatatttacagtaattctgaacttttgtttgag-ttctg 34892
Query: 384 ttgttgccc 392
|||||||||
Sbjct: 34891 ttgttgccc 34883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,783
Number of Sequences: 1807
Number of extensions: 18783
Number of successful extensions: 269
Number of sequences better than 1.0e-20: 1
length of query: 1186
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1170
effective length of database: 10,329,639
effective search space: 12085677630
effective search space used: 12085677630
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)