BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB09RM1.SCF screened BAC_end
         (1157 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1711                                                         878   0.0  

>3x_Contig1711 
          Length = 15491

 Score =  878 bits (443), Expect = 0.0
 Identities = 462/466 (99%), Gaps = 2/466 (0%)
 Strand = Plus / Minus

                                                                        
Query: 71   caancttcaacggtgttttcaccacaagccaaaccttgaagcagaaaa-ggtagaaaacc 129
            ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7893 caagcttcaacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacc 7834

                                                                        
Query: 130  taaaatgatccaaaaaaactggagaattagaaagacctgaccagagtaataccaaccttt 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7833 taaaatgatccaaaaaaactggagaattagaaagacctgaccagagtaataccaaccttt 7774

                                                                        
Query: 190  gggtcctctgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgttttttttc 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7773 gggtcctctgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgttttttttc 7714

                                                                        
Query: 250  cttccagaaatattagtcttggttctcttttttaatcgaaagcctttcctttactagtct 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7713 cttccagaaatattagtcttggttctcttttttaatcgaaagcctttcctttactagtct 7654

                                                                        
Query: 310  tacttgcatcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatac 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653 tacttgcatcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatac 7594

                                                                        
Query: 370  aactggcacttatataataatgggaaagtttaatgttaccaccagccagaacggaacttt 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7593 aactggcacttatataataatgggaaagtttaatgttaccaccagccagaacggaacttt 7534

                                                                        
Query: 430  ggctatggctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcct 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7533 ggctatggctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcct 7474

                                                          
Query: 490  ggtgtttttcaagcaacatggggatgaataaggaacacatattgaa 535
            ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 7473 ggtgtttttcaagcaacat-gggatgaataaggaacacatagtgaa 7429


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,324
Number of Sequences: 1807
Number of extensions: 11324
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 1157
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1141
effective length of database: 10,329,639
effective search space: 11786118099
effective search space used: 11786118099
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)