BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZB10FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 745 0.0
>3x_Contig1785
Length = 37935
Score = 745 bits (376), Expect = 0.0
Identities = 425/435 (97%), Gaps = 5/435 (1%)
Strand = Plus / Minus
Query: 85 ctttcaaatccgaaaaacctaacgaaatattctttagaggtacttacgctgctgttccat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16912 ctttcaaatccgaaaaacctaacgaaatattctttagaggtacttacgctgctgttccat 16853
Query: 145 tggataagatgactgtcggtttgcacagatttggagatggtttgtacgaagagtttcaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16852 tggataagatgactgtcggtttgcacagatttggagatggtttgtacgaagagtttcaat 16793
Query: 205 taaccaaataaatactttagtcttagtacataatgccgaatcgttgctacgaatacatcc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16792 taaccaaataaatactttagtcttagtacataatgccgaatcgttgctacgaatacatcc 16733
Query: 265 tgataaattgattacccttgtaagtattcccatttcttcaacatcatgtaataaaagcac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16732 tgataaattgattacccttgtaagtattcccatttcttcaacatcatgtaataaaagcac 16673
Query: 325 ttactgaataacanaccgccatgctcaccagtttatctttcctttgtaaacttgcacatt 384
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16672 ttactgaataacaaaccgccatgctcaccagtttatctttcctttgtaaacttgcacatt 16613
Query: 385 ttactatcaatgctcttatgatattggtttaacaaatagaaaatcgtgaaaattgtgaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16612 ttactatcaatgctcttatgatattggtttaacaaatagaaaatcgtgaaaattgtgaaa 16553
Query: 445 atattttctggtttcagaaagacatttagatgttgggataaattaacttgtatatataaa 504
||| | |||||| ||||||||||| ||||||||| |||||||| ||| ||||||||| ||
Sbjct: 16552 ata-tatctggtatcagaaagaca-ttagatgtt-ggataaatcaac-tgtatatat-aa 16498
Query: 505 aacttagatgaaaga 519
||| |||||||||||
Sbjct: 16497 aacgtagatgaaaga 16483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,196
Number of Sequences: 1807
Number of extensions: 15196
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)