BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB11FM1.SCF screened BAC_end
         (991 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1777                                                         973   0.0  

>3x_Contig1777 
          Length = 26319

 Score =  973 bits (491), Expect = 0.0
 Identities = 590/615 (95%), Gaps = 6/615 (0%)
 Strand = Plus / Minus

                                                                        
Query: 91   caaatgaaaatgagctagcgagtaacacagtaacacgatgtggacgataaattgtcttat 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 caaatgaaaatgagctagcgagtaacacagtaacacgatgtggacgataaattgtcttat 3637

                                                                        
Query: 151  ccaggtctttattgttgatcatctttttcaaggattatcatcttgatagataaagatgtc 210
            ||||||||||||||||||||| |    |||||||||| ||||||||||||||||||||||
Sbjct: 3636 ccaggtctttattgttgatcagcggcatcaaggattagcatcttgatagataaagatgtc 3577

                                                                        
Query: 211  agacaacgatggatca-atgttatagcgatttaataggtgtttttccctattatttcttc 269
            ||||||||| ||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3576 agacaacgagggagcgtatgttatagcgatttaataggtgtttttccctattatttcttc 3517

                                                                        
Query: 270  gtagaagttgtcttcatgaatagttttactaactagatgagtatgcgttgctgaatgtca 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3516 gtagaagttgtcttcatgaatagttttactaactagatgagtatgcgttgctgaatgtca 3457

                                                                        
Query: 330  attcaagcacaaactatctaatacagatttaatgacggtccagagaactatgaagatttt 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3456 attcaagcacaaactatctaatacagatttaatgacggtccagagaactatgaagatttt 3397

                                                                        
Query: 390  gaccaagagcatttctcagattacgacggatttgatgagggcgagggtaagtttggcgat 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3396 gaccaagagcatttctcagattacgacggatttgatgagggcgagggtaagtttggcgat 3337

                                                                        
Query: 450  gagaacggattacgcacagatgaaaacgggaacacgatagttgctggaggatttggtcca 509
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 gagaacggattaggcacagatgaaaacgggaacacgatagttgctggaggatttggtcca 3277

                                                                        
Query: 510  gaagagttccagcaacaggaggctcgttggagaagaactttgaaggagaaggctatcgcc 569
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3276 gaagagttccagcaacaggaggctcgtcggagaagaactttgaaggagaaggctatcgcc 3217

                                                                        
Query: 570  aaggaagatagaactacaacaccatacatgacataattccaaagacccagaattttaggt 629
            ||||||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||
Sbjct: 3216 aaggaagatagaactacaacaccatacatgacaaagtacgaaagagccagaattttaggt 3157

                                                                        
Query: 630  accagaacccttgcaaatatctattaacgcaccagtgctcggttgaccttggcaaggtga 689
            ||||| | |||||||||||||||| |||||||||||| || ||||| ||||| |||||||
Sbjct: 3156 accag-agccttgcaaatatctatgaacgcaccagtgttc-gttga-cttgg-aaggtga 3101

                           
Query: 690  aacccgacccattga 704
            || ||||||||||||
Sbjct: 3100 aa-ccgacccattga 3087


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7457
Number of Sequences: 1807
Number of extensions: 7457
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)