BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZB11RM1.SCF screened BAC_end (943 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1060 981 0.0 >3x_Contig1060 Length = 4482 Score = 981 bits (495), Expect = 0.0 Identities = 541/554 (97%), Gaps = 2/554 (0%) Strand = Plus / Minus Query: 45 gctttgccaagatgtagcgaaaactatcatgaataaaggtgaaagaccagatgtaatcat 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 gctttgccaagatgtagcgaaaactatcatgaataaaggtgaaagaccagatgtaatcat 536 Query: 105 tgctattactggtggtggtatgattccagccaggataatcagatcttttttgaaatccaa 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 tgctattactggtggtggtatgattccagccaggataatcagatcttttttgaaatccaa 476 Query: 165 gggtcataagaacattccaatccaagcaatcggtttgtcattatatgaagatttatgnct 224 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 475 gggtcaaaagaacattccaatccaagcaatcggtttgtcattatatgaagatttaggtct 416 Query: 225 ggatgaacaagttgagacaattggaaaagaagttatcagaactcaatggttagattttgg 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 ggatgaacaagttgagacaattggaaaagaagttatcagaactcaatggttagattttgg 356 Query: 285 tgctttggacaaacattttgattctttgatcggtaagagaattttgattgtcgatgaagt 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 tgctttggacaaacattttgattctttgatcggtaagagaattttgattgtcgatgaagt 296 Query: 345 tgatgacacgagaactaccctacattatgccttgactgaattggaaaaagaggttcatga 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 tgatgacacgagaactaccctacattatgccttgactgaattggaaaaagaggttcatga 236 Query: 405 gcaacaggtgaaattgaacagattgagtgaggagactactttctctatctttgttttaca 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 gcaacaggtgaaattgaacagattgagtgaggagactactttctctatctttgttttaca 176 Query: 465 caacaaggacaagccttaaaaggttgaactaccaaaataactgttcgacattgaaagata 524 |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 175 caacaaggacaagcctaaaaaggttgaactaccaaaagaactgttcgacaatgaaagata 116 Query: 525 tattgcagctgttactgggcctgacaaatggttattgct-tccatggggagcaatttatt 583 ||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||| || Sbjct: 115 tattgcagctgttactgtgcctgacaaatggtta-tgctatccatgggaagcaattgata 57 Query: 584 ttggagaacatacc 597 ||| |||||||||| Sbjct: 56 ttgaagaacatacc 43 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,095 Number of Sequences: 1807 Number of extensions: 10095 Number of successful extensions: 96 Number of sequences better than 1.0e-20: 1 length of query: 943 length of database: 10,358,551 effective HSP length: 16 effective length of query: 927 effective length of database: 10,329,639 effective search space: 9575575353 effective search space used: 9575575353 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)