BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZB12FM1.SCF screened BAC_end (1291 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1764 549 e-156 >3x_Contig1764 Length = 22510 Score = 549 bits (277), Expect = e-156 Identities = 344/364 (94%), Gaps = 3/364 (0%) Strand = Plus / Minus Query: 118 ctctcatgatggtggtcaagaaggatggaacctcttgattagcttcactcaacaaactaa 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15171 ctctcatgatggtggtcaagaaggatggaacctcttgattagcttcactcaacaaactaa 15112 Query: 178 ccaattccttagcgacattcttgtttccacggttaaagaaggtagtagcaacaccggtgt 237 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 15111 ccaattccttagcgacattcttgttaccacggttaaagaaggtagtagcaacaccggtgt 15052 Query: 238 taccggctctttttttttctaccaannctgnggacgtaatcatcgatatcatttggcaag 297 ||||||| | || ||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 15051 taccggcacgaccagtt-ctaccaattctgtggacgtaatcatcgatatcatttggcaag 14993 Query: 298 tcaaagttgataacatgagtaacgtctggaatatccaaacctctagcagcgacagcggta 357 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 14992 tcaaagttgataacatgagtaacgtttggaatatccaaacctctagcagcgacagcggta 14933 Query: 358 gcaaccaagatagtagctctaccggccttgaaagcagacaacgcacgttcacgttcacct 417 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 14932 gcaaccaagatagtagctctaccggtcttgaaagcagacaacgcacgttcacgttcacct 14873 Query: 418 tgcgtacggtcaccatggatagcagnagccctcgaaaccttccatgatccaagaagncag 477 || |||||||||||||||||||||| || ||| ||||||||||||||| ||||||| ||| Sbjct: 14872 tgtgtacggtcaccatggatagcagtag-ccttgaaaccttccatgat-caagaagtcag 14815 Query: 478 tcaa 481 |||| Sbjct: 14814 tcaa 14811 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6523 Number of Sequences: 1807 Number of extensions: 6523 Number of successful extensions: 35 Number of sequences better than 1.0e-20: 1 length of query: 1291 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1275 effective length of database: 10,329,639 effective search space: 13170289725 effective search space used: 13170289725 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)