BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZB12RM1.SCF screened BAC_end
         (1356 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1804                                                         660   0.0  

>3x_Contig1804 
          Length = 51183

 Score =  660 bits (333), Expect = 0.0
 Identities = 368/376 (97%), Gaps = 3/376 (0%)
 Strand = Plus / Minus

                                                                         
Query: 81    ctttgcacgtttcacccttagttttatacctttctctgtcctgacatgtacctgtaggct 140
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18904 ctttgcacgtttcacccttagtattatacctttctctgtcctgacatgtacctgtaggct 18845

                                                                         
Query: 141   ccacaacaacatggtcacctggttggaatttagtcacactagagccgacttgtgaaacca 200
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18844 ccacaacaacatggtcacctggttggaatttagtcacactagagccgacttgtgaaacca 18785

                                                                         
Query: 201   cgcctgccatctcgtggcccatggcttgaggcaatcccctaccactaatttcatgntttt 260
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 18784 cgcctgccatctcgtggcccatggcttgaggcaatcccctaccactaatttcatgtgttt 18725

                                                                         
Query: 261   caccatcttttgggaagaagtttggtccgtcgaggagttcatgtagatcagtaccacaga 320
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18724 caccatcttttgggaagaagtttggtccgtcgaggagttcatgtagatcagtaccacaga 18665

                                                                         
Query: 321   taccacaccacactatatcgatcaaaacatcatccggtttttcaattacctggttcaggt 380
             |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 18664 taccacaccacactatatcgatcaaaacatcatccggtttgtcaatta-ctggttcaggt 18606

                                                                         
Query: 381   agatcagtggtgaaacggatatctctggttcc-aaaatacgctaaagcacgcatgttttt 439
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 18605 agatcagtggtgaaacggatatctctggttccaaaaatacgctaaagcacgcatg-tttt 18547

                             
Query: 440   tgcgttattactcttc 455
             || |||||||||||||
Sbjct: 18546 tgtgttattactcttc 18531


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,447
Number of Sequences: 1807
Number of extensions: 13447
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 1356
length of database: 10,358,551
effective HSP length: 17
effective length of query: 1339
effective length of database: 10,327,832
effective search space: 13828967048
effective search space used: 13828967048
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)