BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZB12RM1.SCF screened BAC_end (1356 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1804 660 0.0 >3x_Contig1804 Length = 51183 Score = 660 bits (333), Expect = 0.0 Identities = 368/376 (97%), Gaps = 3/376 (0%) Strand = Plus / Minus Query: 81 ctttgcacgtttcacccttagttttatacctttctctgtcctgacatgtacctgtaggct 140 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18904 ctttgcacgtttcacccttagtattatacctttctctgtcctgacatgtacctgtaggct 18845 Query: 141 ccacaacaacatggtcacctggttggaatttagtcacactagagccgacttgtgaaacca 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18844 ccacaacaacatggtcacctggttggaatttagtcacactagagccgacttgtgaaacca 18785 Query: 201 cgcctgccatctcgtggcccatggcttgaggcaatcccctaccactaatttcatgntttt 260 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 18784 cgcctgccatctcgtggcccatggcttgaggcaatcccctaccactaatttcatgtgttt 18725 Query: 261 caccatcttttgggaagaagtttggtccgtcgaggagttcatgtagatcagtaccacaga 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18724 caccatcttttgggaagaagtttggtccgtcgaggagttcatgtagatcagtaccacaga 18665 Query: 321 taccacaccacactatatcgatcaaaacatcatccggtttttcaattacctggttcaggt 380 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 18664 taccacaccacactatatcgatcaaaacatcatccggtttgtcaatta-ctggttcaggt 18606 Query: 381 agatcagtggtgaaacggatatctctggttcc-aaaatacgctaaagcacgcatgttttt 439 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 18605 agatcagtggtgaaacggatatctctggttccaaaaatacgctaaagcacgcatg-tttt 18547 Query: 440 tgcgttattactcttc 455 || ||||||||||||| Sbjct: 18546 tgtgttattactcttc 18531 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,447 Number of Sequences: 1807 Number of extensions: 13447 Number of successful extensions: 142 Number of sequences better than 1.0e-20: 1 length of query: 1356 length of database: 10,358,551 effective HSP length: 17 effective length of query: 1339 effective length of database: 10,327,832 effective search space: 13828967048 effective search space used: 13828967048 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)