BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC01RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1586 0.0
>3x_Contig1496
Length = 9544
Score = 1586 bits (800), Expect = 0.0
Identities = 812/815 (99%), Gaps = 1/815 (0%)
Strand = Plus / Plus
Query: 67 gctgaacctacattcctgaagcaaaaattcatccttctctcggagttcactaaggtcgta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 gctgaacctacattcctgaagcaaaaattcatccttctctcggagttcactaaggtcgta 3552
Query: 127 tctgcaagcctaagtgatcgcgacttggtacatcagaaagttgatcaattgacgcaatat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3553 tctgcaagcctaagtgatcgcgacttggtacatcagaaagttgatcaattgacgcaatat 3612
Query: 187 gtcaatgtaattatcggactcacattttgaaagggaaatgaaccacgtcattcagaaaat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 gtcaatgtaattatcggactcacattttgaaagggaaatgaaccacgtcattcagaaaat 3672
Query: 247 ggggcgttaacaattaaagtagttataagaataggctatgttattgacatgtaaaagatc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3673 ggggcgttaacaattaaagtagttataagaataggctatgttattgacatgtaaaagatc 3732
Query: 307 gaaacaggagtagtaagattatacacgatataaagggttttctgacctattttttcaagt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3733 gaaacaggagtagtaagattatacacgatataaagggttttctgacctattttttcaagt 3792
Query: 367 attcttgatatccgatagtttctaatttggcagctttcgttaacacctcttcttcttgtt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793 attcttgatatccgatagtttctaatttggcagctttcgttaacacctcttcttcttgtt 3852
Query: 427 tttgtaagaattgttgcatcttagagaagtatactggatcatacgcacccaaaattctga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 tttgtaagaattgttgcatcttagagaagtatactggatcatacgcacccaaaattctga 3912
Query: 487 ttgctaacaaagcagcatttgtactattgttaattgcaactgtggccacgggtacacctc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 ttgctaacaaagcagcatttgtactattgttaattgcaactgtggccacgggtacacctc 3972
Query: 547 ttggcatttgtacaatggaatgtagagaatcgacaccgtctagggtggagccctttactg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3973 ttggcatttgtacaatggaatgtagagaatcgacaccgtctagggtggagccctttactg 4032
Query: 607 gaacaccgatgactggcaacggagtcatagcagccaccatgcctggtaagtgggctgcac 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 gaacaccgatgactggcaacggagtcatagcagccaccatgcctggtaagtgggctgcac 4092
Query: 667 caccagcaccggcaatgatggctttgataccacggttagcagcttcgatagcanacttag 726
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4093 caccagcaccggcaatgatggctttgataccacggttagcagcttcgatagcaaacttag 4152
Query: 727 acattctgtgtggagttctatgagcagagacgatggtcacttcatattgaatatt-aaat 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4153 acattctgtgtggagttctatgagcagagacgatggtcacttcatattgaatattaaaat 4212
Query: 786 cattcaagatatcgcaggccttggacataaccggtagatcagagtctgatcccataataa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4213 cattcaagatatcgcaggccttggacataaccggtagatcagagtctgatcccataataa 4272
Query: 846 tactgatcaatggtctcatagacgcgcggggtaga 880
||||||||||||||||||||||||||| |||||||
Sbjct: 4273 tactgatcaatggtctcatagacgcgccgggtaga 4307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5714
Number of Sequences: 1807
Number of extensions: 5714
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)