BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZC02FM1.SCF screened BAC_end (1003 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1214 761 0.0 >3x_Contig1214 Length = 6334 Score = 761 bits (384), Expect = 0.0 Identities = 429/443 (96%), Gaps = 1/443 (0%) Strand = Plus / Plus Query: 87 tggctgcttgtattttgaacaagttgagaggtcaagttcaagtttgtgccgttaaagctc 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5274 tggctgcttgtattttgaacaagttgagaggtcaagttcaagtttgtgccgttaaagctc 5333 Query: 147 caggtttcggtgataacaggattatcaccttgggcgatattgccatcttgtctggtggta 206 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 5334 caggtttcggtgataacaggaagaacaccttgggcgatattgccatcttgtctggtggta 5393 Query: 207 ctgtctttacngt-gaattggacctaaagccataaaacgctaccatccaacatttgggtt 265 ||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5394 ctgtcttcactgaagaattggacctaaagccagaaaacgctaccatccaacatttgggtt 5453 Query: 266 cttgtgattctgtttctattaccaaggaagataccgttatcttgaatggtaacggtccaa 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5454 cttgtgattctgtttctattaccaaggaagataccgttatcttgaatggtaacggtccaa 5513 Query: 326 aagaaaacatcgaaaccagaattgaacaaatcaagaactctattgacttgaccactacca 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5514 aagaaaacatcgaaaccagaattgaacaaatcaagaactctattgacttgaccactacca 5573 Query: 386 actcttacgaaaaggaaaagttgcaagaacgtttagctaagttgtccggcggtgttgccg 445 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5574 agtcttacgaaaaggaaaagttgcaagaacgtttagctaagttgtccggcggtgttgccg 5633 Query: 446 tcattagagtcggtggttcttccgaagtcgaattcggcgaaaagaaggaccgttacgatt 505 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 5634 tcattagagtcggtggttcttccgaagtcgaagtcggcgaaaagaaggaccgttacgatg 5693 Query: 506 acgctttttacgcttcaagagct 528 ||||||| ||||| |||||||| Sbjct: 5694 acgctttgaacgctacaagagct 5716 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8249 Number of Sequences: 1807 Number of extensions: 8249 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 1 length of query: 1003 length of database: 10,358,551 effective HSP length: 16 effective length of query: 987 effective length of database: 10,329,639 effective search space: 10195353693 effective search space used: 10195353693 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)