BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC02RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 981 0.0
>3x_Contig1785
Length = 37935
Score = 981 bits (495), Expect = 0.0
Identities = 529/539 (98%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 45 cttgcctgttctcaatattggctaagtatgatttacttggttcttttaatggcaggtttc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15413 cttgcctgttctcaatattggctaagtatgatttacttggttcttttaatggcaggtttc 15472
Query: 105 aacttctcctcccatggttctcaagatcttttcccaacaatgttgacttctcaataccaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15473 aacttctcctcccatggttctcaagatcttttcccaacaatgttgacttctcaataccaa 15532
Query: 165 ttctccgctgatgcatcaactgttacaaactctgttgcaaaccttggtgccatttttggt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 15533 ttctccgctgatgcatcaactgttacaaactctgttgcaaaccttggtgccatcgctggt 15592
Query: 225 ggtatcattgttgcccatgcctcctctttctttggtcgtagattctctatcattgtatgt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593 ggtatcattgttgcccatgcctcctctttctttggtcgtagattctctatcattgtatgt 15652
Query: 285 tgtattggcggtggtgctatgttatacccatggggttttgttgctaataaatctggaatt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15653 tgtattggcggtggtgctatgttatacccatggggttttgttgctaataaatctggaatt 15712
Query: 345 aatgcttcagtcttcttcttacaattcttcgtccaaggtgcttggggtattgtcccaatt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15713 aatgcttcagtcttcttcttacaattcttcgtccaaggtgcttggggtattgtcccaatt 15772
Query: 405 catttgacggaattagccccaacggagttcatagctttgatcactggtgttgcttaccaa 464
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 15773 catttgacggaattagccccaacggagttcagagctttgatcactggtgttgcttaccaa 15832
Query: 465 ttgggtaatatgatatctagtgcctcctcaactatcgaagcctccattggtgaaagattc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15833 ttgggtaatatgatatctagtgcctcctcaactatcgaagcctccattggtgaaagattc 15892
Query: 525 ccacttgaaggtagagaggacgctttattattatg-gtaaggtgacgtgtatcttcatg 582
||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 15893 ccacttgaaggtagagaggacgcttatgcattatgcgtaaggtgatgtgtatcttcatg 15951
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7981
Number of Sequences: 1807
Number of extensions: 7981
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)