BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZC03FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1364 811 0.0
>3x_Contig1364
Length = 7464
Score = 811 bits (409), Expect = 0.0
Identities = 459/473 (97%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 73 atgatggatatgttatttgaaaaagcgaatcatggctccaaacaggattttgacaagctt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6782 atgatggatatgttatttgaaaaagcgaatcatggctccaaacaggattttgacaagctt 6723
Query: 133 ggtggaactggaaaatatggtgtgcacatatcatcgactccgaaaagtgtaccggaattg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6722 ggtggaactggaaaatatggtgtgcacatatcatcgactccgaaaagtgtaccggaattg 6663
Query: 193 ctatgcgaagctcgt-tatcaagacgttcatggagaaatatctttggcaagtcccgagtc 251
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6662 ctatgcgaagc-cgtctaccaagacgttcatggagaaatatctttggcaagtcccgagtc 6604
Query: 252 tgaatcaattgacatttctaatagtgctggcaggagagtagttatattccaagatttgct 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6603 tgaatcaattgacatttctaatagtgctggcaggagagtagttatattccaagatttgct 6544
Query: 312 caagaacattggcgttgggaccttattagctcaggtcagcggtggtcctttggaaaaggt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6543 caagaacattggcgttgggaccttattagctcaggtcagcggtggtcctttggaaaaggt 6484
Query: 372 gctatacgcttatgacaataagacaggttcccgagatgtcgtttatgttgaattgcattt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6483 gctatacgcttatgacaataagacaggttcccgagatgtcgtttatgttgaattgcattt 6424
Query: 432 cttgttccctgatgatgctgctcagtttatgaaatacccccgattccacctattcaaagt 491
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 6423 cttgttccctgatgatgctgctcagtttatgaaatacgccagattccacctattcaaagt 6364
Query: 492 gaaacgggtacatttagtttcacatttgggtgtaaaacattctttaaactcct 544
||| | |||||||||||| |||||| |||||||| | ||||| || ||||||
Sbjct: 6363 gaacggtgtacatttagttccacattggggtgtaatagattctctagactcct 6311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7868
Number of Sequences: 1807
Number of extensions: 7868
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)