BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC03RM1.SCF screened BAC_end
         (1004 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1684                                                        1235   0.0  

>3x_Contig1684 
          Length = 14609

 Score = 1235 bits (623), Expect = 0.0
 Identities = 647/654 (98%), Gaps = 2/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 41  gcttggtaaacagccaagatatccataccgttaaccttcaaaccaggaatgtattgacca 100
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gcttggtaaacagccaagatatccataccgttaaccttcaaaccaggaatgtattgacca 212

                                                                       
Query: 101 cgcttgaagtattcagtcatggctgaagatcttgcggcagcggtacccataccgtacttg 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cgcttgaagtattcagtcatggctgaagatcttgcggcagcggtacccataccgtacttg 272

                                                                       
Query: 161 ttgttttcacaacagaagacggctggtaagttccataacttggccatgttgaaggattcg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgttttcacaacagaagacggctggtaagttccataacttggccatgttgaaggattcg 332

                                                                       
Query: 221 aaaacttgaccttggttagaggcaccatcaccgtacaaggcaaaagaacaagcatcttcg 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaaacttgaccttggttagaggcaccatcaccgtacaaggcaaaagaacaagcatcttcg 392

                                                                       
Query: 281 tgtttgtattgatgagcgaaggccaaaccagcacccaatgggacttgggcaccaacgata 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgtttgtattgatgagcgaaggccaaaccagcacccaatgggacttgggcaccaacgata 452

                                                                       
Query: 341 ccattaccaccgtagaaaccaggggcgtacaagtgcatggaaccacccttaccgaaggac 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccattaccaccgtagaaaccaggggcgtacaagtgcatggaaccacccttaccgaaggac 512

                                                                       
Query: 401 acaccagttcttctacccatcaattcagccaacacagcttgaacagcagcacctctcatg 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 acaccagttcttctacccatcaattcagccaacacagcttgaacagcagcacctctcatg 572

                                                                       
Query: 461 taggtgaaaccatgacatctgtaagaggtgatgacggtatcacgcttagtgatagcgttt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taggtgaaaccatgacatctgtaagaggtgatgacggtatcacgcttagtgatagcgttt 632

                                                                       
Query: 521 tcaataccaacggcaatggcttcttgaccgacagaggagtgacagaaacctctaattttc 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcaataccaacggcaatggcttcttgaccgacagaggagtgacagaaacctctaattttc 692

                                                                       
Query: 581 ttagccttgtacaaagcgttacaggccatttccattcttctaaccataatcatatccttg 640
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 693 ttagccttgtacaaagcgtcacaggccatttccattcttctaacgataatcatatccttg 752

                                                                 
Query: 641 tacctttgtagcaaattggacttggtgggttttgattacttaatttaggaacat 694
           ||| ||||||||||||||||||||||||  |||||| |||||||| ||||||||
Sbjct: 753 tacatttgtagcaaattggacttggtgg--tttgataacttaattcaggaacat 804


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6885
Number of Sequences: 1807
Number of extensions: 6885
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)