BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZC04FM1.SCF screened BAC_end (952 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1296 676 0.0 >3x_Contig1296 Length = 7334 Score = 676 bits (341), Expect = 0.0 Identities = 486/532 (91%), Gaps = 2/532 (0%) Strand = Plus / Minus Query: 110 aaagagaacgagttccctggcggacttgtggaatacttggtagctgttgctaatgatcaa 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4873 aaagagaacgagttccctggcggacttgtggaatacttggtagctgttgctaatgatcaa 4814 Query: 170 atgaaagctgcggactatgccgtggcaatttctcaaaagtatggttcatatgtttctaaa 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4813 atgaaagctgcggactatgccgtggcaatttctcaaaagtatggttcatatgtttctaaa 4754 Query: 230 gttcattaatgntttataacagcgcaaatagaaaagacattggacggatttgcctacgtg 289 |||||| || | ||||| || | |||||||||||| |||||| ||||||| || ||| Sbjct: 4753 gttcatgaacgtgatataaaagagaaaatagaaaagaaattggaaggatttgaataagtg 4694 Query: 290 gcaaagtgtgctacaagtggtatttgtaaggttatatttgatgacttaaggactccatac 349 | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 4693 gaaaagtgtgctaaaagtggtatttgtaaggttatatttgatgaattaaggactccatac 4634 Query: 350 agtgaaattttcgacaaatcctggtatggaggaaaccaaactcagcaaattgcctctact 409 ||||||||||||||||||||||||||||||||||| ||| | || |||||| | || | Sbjct: 4633 agtgaaattttcgacaaatcctggtatggaggaaaaaaaaataagaaaattgaatataat 4574 Query: 410 gttcaagaatacttgaatgacattaaagaacagatgaatccattcattttcttctcatta 469 ||| ||||||| |||||||||||||||||||||||||||||||| ||||| || | |||| Sbjct: 4573 gttaaagaataattgaatgacattaaagaacagatgaatccattaattttattataatta 4514 Query: 470 gttgaaactactgtagaagactctttattgaaatacgtgcaatgtttgaagtacgatcat 529 ||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 4513 gttgaaaataatgtagaagacgctttattgaaatacgtgcaatgtttgaagtacgaacat 4454 Query: 530 tccatatagaataaaggaaataaattcttatattgcataagaagggaattcaaaaatttc 589 |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||| Sbjct: 4453 tccataaagaataaaggaaataaattcttagattgcataagaagggacttcaaaatcttc 4394 Query: 590 taccagtttatttgtagaatatgtgccaactggaaaaaaaagccatgcttga 641 |||||| || |||||||||||||||||| || ||| |||| ||||||||||| Sbjct: 4393 taccag-ttgtttgtagaatatgtgccagct-gaagaaaaggccatgcttga 4344 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9963 Number of Sequences: 1807 Number of extensions: 9963 Number of successful extensions: 365 Number of sequences better than 1.0e-20: 1 length of query: 952 length of database: 10,358,551 effective HSP length: 16 effective length of query: 936 effective length of database: 10,329,639 effective search space: 9668542104 effective search space used: 9668542104 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)