BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC04FM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1296                                                         676   0.0  

>3x_Contig1296 
          Length = 7334

 Score =  676 bits (341), Expect = 0.0
 Identities = 486/532 (91%), Gaps = 2/532 (0%)
 Strand = Plus / Minus

                                                                        
Query: 110  aaagagaacgagttccctggcggacttgtggaatacttggtagctgttgctaatgatcaa 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 aaagagaacgagttccctggcggacttgtggaatacttggtagctgttgctaatgatcaa 4814

                                                                        
Query: 170  atgaaagctgcggactatgccgtggcaatttctcaaaagtatggttcatatgtttctaaa 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 atgaaagctgcggactatgccgtggcaatttctcaaaagtatggttcatatgtttctaaa 4754

                                                                        
Query: 230  gttcattaatgntttataacagcgcaaatagaaaagacattggacggatttgcctacgtg 289
            |||||| || |   ||||| || | |||||||||||| |||||| |||||||  || |||
Sbjct: 4753 gttcatgaacgtgatataaaagagaaaatagaaaagaaattggaaggatttgaataagtg 4694

                                                                        
Query: 290  gcaaagtgtgctacaagtggtatttgtaaggttatatttgatgacttaaggactccatac 349
            | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4693 gaaaagtgtgctaaaagtggtatttgtaaggttatatttgatgaattaaggactccatac 4634

                                                                        
Query: 350  agtgaaattttcgacaaatcctggtatggaggaaaccaaactcagcaaattgcctctact 409
            |||||||||||||||||||||||||||||||||||  ||| | || ||||||  | || |
Sbjct: 4633 agtgaaattttcgacaaatcctggtatggaggaaaaaaaaataagaaaattgaatataat 4574

                                                                        
Query: 410  gttcaagaatacttgaatgacattaaagaacagatgaatccattcattttcttctcatta 469
            ||| ||||||| |||||||||||||||||||||||||||||||| ||||| || | ||||
Sbjct: 4573 gttaaagaataattgaatgacattaaagaacagatgaatccattaattttattataatta 4514

                                                                        
Query: 470  gttgaaactactgtagaagactctttattgaaatacgtgcaatgtttgaagtacgatcat 529
            ||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 4513 gttgaaaataatgtagaagacgctttattgaaatacgtgcaatgtttgaagtacgaacat 4454

                                                                        
Query: 530  tccatatagaataaaggaaataaattcttatattgcataagaagggaattcaaaaatttc 589
            |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||  |||
Sbjct: 4453 tccataaagaataaaggaaataaattcttagattgcataagaagggacttcaaaatcttc 4394

                                                                
Query: 590  taccagtttatttgtagaatatgtgccaactggaaaaaaaagccatgcttga 641
            |||||| || |||||||||||||||||| || ||| |||| |||||||||||
Sbjct: 4393 taccag-ttgtttgtagaatatgtgccagct-gaagaaaaggccatgcttga 4344


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9963
Number of Sequences: 1807
Number of extensions: 9963
Number of successful extensions: 365
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)