BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC04RM1.SCF screened BAC_end
         (883 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1587                                                        1489   0.0  

>3x_Contig1587 
          Length = 10277

 Score = 1489 bits (751), Expect = 0.0
 Identities = 821/839 (97%), Gaps = 4/839 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   agcttctcttaattgatcaactctgcttgccagtaggataagttattcgaacttgaagag 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6500 agcttctcttaattgatcaactctgcttgccagtaggataagttattcgaacttgaagag 6441

                                                                        
Query: 105  aaaaaatatcaatgaaatatatacaatatgagaaaaaaagaaaaagaaaagaaaatgtat 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6440 aaaaaatatcaatgaaatatatacaatatgagaaaaaaagaaaaagaaaagaaaatgtat 6381

                                                                        
Query: 165  acattacataccattcatacataaacacgactatgcctgattaatagtgttgaataattt 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6380 acattacataccattcatacataaacacgactatgcctgattaatagtgttgaataattt 6321

                                                                        
Query: 225  cttcatacagttcagccaaacaatggtttcttcagcttaacctcagctcttaatgaccat 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320 cttcatacagttcagccaaacaatggtttcttcagcttaacctcagctcttaatgaccat 6261

                                                                        
Query: 285  acctggacctgtgtcagttgtaactcttctcaatccctatctcatctcatctcatctcat 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6260 acctggacctgtgtcagttgtaactcttctcaatccctatctcatctcatctcatctcat 6201

                                                                        
Query: 345  ctcatctcatctcatcgtatctcagcgctcagtgtacaattttatgaaaatttcttttcc 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 ctcatctcatctcatcgtatctcagcgctcagtgtacaattttatgaaaatttcttttcc 6141

                                                                        
Query: 405  aatatcagtgctgcccaattttcgcttacttcaacttgagaaatgaagtcaaaacaaaca 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 aatatcagtgctgcccaattttcgcttacttcaacttgagaaatgaagtcaaaacaaaca 6081

                                                                        
Query: 465  atcaagataacggaggatattggtttgcgaccgggtaatgacaagtggaaaatatgagat 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 atcaagataacggaggatattggtttgcgaccgggtaatgacaagtggaaaatatgagat 6021

                                                                        
Query: 525  catgtgacttgtatattccccgattctctctaattctcttacccggatatatttttgata 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 catgtgacttgtatattccccgattctctctaattctcttacccggatatatttttgata 5961

                                                                        
Query: 585  tccaattcacgtgacctagattccctatgctctatttcacatcttctgaacaattttgat 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5960 tccaattcacgtgacctagattccctatgctctatttcacatcttctgaacaattttgat 5901

                                                                        
Query: 645  gagctttgttgcaatattatatatgatatgctaagcataaagaacagccgaaaataagaa 704
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5900 gagctttgttgcaatattatatatgatatgctaagcataaagaacagccgaaaataggaa 5841

                                                                        
Query: 705  tctaatcataccagatagcaggctattttatccgatttttatcataacagagacattacc 764
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5840 tctaatcataccagatagcaggctattttatccgatatttatcataacagagacattacc 5781

                                                                        
Query: 765  tggcatttctgatatcctatcaaatcatttgttatgtcagaatgaaa-acagtacatgtg 823
            ||  |||||||||||||||||||||||| ||||||||||||  |||| ||||||||||| 
Sbjct: 5780 tgcaatttctgatatcctatcaaatcatctgttatgtcagatagaaatacagtacatgt- 5722

                                                                       
Query: 824  gtttggtttcccgccgggtacttaaagcttaccaatgggcaccgcaattttgaaaacgt 882
            || |||||||||| | ||||| || |||| || ||| |||||||||| |||||||||||
Sbjct: 5721 gtctggtttcccggcaggtac-tagagctaacgaattggcaccgcaa-tttgaaaacgt 5665


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,429
Number of Sequences: 1807
Number of extensions: 11429
Number of successful extensions: 1086
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)