BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZC05FM1.SCF screened BAC_end
         (986 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1130                                                         389   e-108

>3x_Contig1130 
          Length = 4826

 Score =  389 bits (196), Expect = e-108
 Identities = 287/312 (91%), Gaps = 4/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 256 ttaaagtttactgaaatggtctatccatattgtgatgggattggtattaattgtgggtgt 315
           |||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||||
Sbjct: 42  ttaaagtttagtgaaatggtgtatggatattgtgatgggattggtattaattgtgggtgt 101

                                                                       
Query: 316 cccattcgtgaacaagttagggaaggtatcggttctgcgttgatttacaatggggaacta 375
              ||| ||||| |||||||||||||||| |||| || ||||||||| ||||||||| ||
Sbjct: 102 gggattggtgaagaagttagggaaggtatgggttgtgggttgatttagaatggggaagta 161

                                                                       
Query: 376 ttatgtgatatggtaaaagctgtcaaag-ataaatatagggactctgtaagattggagac 434
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 162 ttatgtgatatggtaaaagctgtcaaagcataaatatagggactctgtaagattggagac 221

                                                                       
Query: 435 taagatcagaattcacgacgatgttaaagacactgttaaattgtgcgatgatttatgcga 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 taagatcagaattcacgacgatgttaaagacactgttaaattgtgcgatgatttatgcga 281

                                                                       
Query: 495 atcttgttgtatattggataacaattcatggcagaaccagaacaccaagattcgtcggtt 554
           | | || |||| ||||||||||| ||||||||||||| |||||| ||||| ||||||| |
Sbjct: 282 agc-tggtgtagattggataacagttcatggcagaacgagaacaacaaga-tcgtcgg-t 338

                       
Query: 555 ccctgtaaactt 566
            |||||||||||
Sbjct: 339 acctgtaaactt 350


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5989
Number of Sequences: 1807
Number of extensions: 5989
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)